High-throughput biotinylation of proteins.

One of the more useful tags for a protein in biochemical experiments is biotin, because of its femtomolar dissociation constant with streptavidin or avidin. Robust methodologies have been developed for other the in vivo addition of a single biotin to recombinant protein or the in vitro enzymatic or chemical addition of biotin to a protein. Such modified proteins can be used in a variety of experiments, such as affinity selection of phage-displayed peptides or antibodies, pull-down of interacting proteins from cell lysates, or displaying proteins on arrays.

The effect of the incident collision energy on the porosity of vapor-deposited amorphous solid water films.

Molecular beam techniques are used to grow water films on Pt(111) with various incident angles and collision energies from 5 to 205 kJ/mol. The effect of the incident angle and collision energy on the porosity and surface area of the vapor-deposited water films was studied using nitrogen physisorption and infrared spectroscopy. At low incident energy (5 kJ/mol), the infrared spectra, which provide a direct measure of the surface area, show that the surface area increases with incident angle and levels off at angles > 65 degrees .

Peptide ligands specific to the oxidized form of Escherichia coli thioredoxin.

Thioredoxin (Trx) is a highly conserved redox protein involved in several essential cellular processes. In this study, our goal was to isolate peptide ligands to Escherichia coli Trx that mimic protein-protein interactions, specifically the T7 polymerase-Trx interaction. To do this, we subjected Trx to affinity selection against a panel of linear and cysteine-constrained peptides using M13 phage display.

Intrinsic diffusion of hydrogen on rutile TiO2(110).

The combined experimental and theoretical study of intrinsic hydrogen diffusion on bridge-bonded oxygen (BBO) rows of TiO 2(110) is presented. Sequences of isothermal scanning tunneling microscopy images demonstrate a complex behavior of hydrogen formed by water dissociation on BBO vacancies. Different diffusion rates are observed for the two hydrogens in the original geminate OH pair suggesting the presence of a long-lived polaronic state.

Evaluations of mosquito age grading techniques based on morphological changes.

Evaluations were made of the accuracy and practicality of mosquito age grading methods based on changes to mosquito morphology; including the Detinova ovarian tracheation, midgut meconium, Polovodova ovariole dilatation, ovarian injection, and daily growth line methods. Laboratory maintained Aedes vigilax (Skuse) and Culex annulirostris (Skuse) females of known chronological and physiological ages were used for these assessments. Application of the Detinova technique to laboratory reared Ae.

Nuclear structure relevant to neutrinoless double beta decay: 76Ge and 76Se.

The possibility of observing neutrinoless double beta decay offers the opportunity of determining the effective neutrino mass if the nuclear matrix element were known. Theoretical calculations are uncertain, and measurements of the occupations of valence orbits by nucleons active in the decay can be important. The occupation of valence neutron orbits in the ground states of 76Ge (a candidate for such decay) and 76Se (the daughter nucleus) were determined by precisely measuring cross sections for both neutron-adding and removing transfer reactions.

Comparing the attractor strength of intra- and interpersonal interlimb coordination using cross-recurrence analysis.

Previous research has demonstrated that intra- and interpersonal rhythmic interlimb coordination are both constrained by the self-organizing entrainment process of coupled oscillators. Despite intra- and interpersonal coordination exhibiting the same stable macroscopic movement patterns the variability of the coordination is typically found to be much greater for inter- compared to intrapersonal coordination. Researchers have assumed that this is due to the interpersonal visual-motor coupling producing a weaker attractor dynamic than the intrapersonal neuromuscular coupling.

Catalytic dehydration of 2-propanol on (WO3)3 clusters on TiO2(110).

Our study of a (WO3)3/TiO2(110) model mixed oxide catalyst shows that this system is an extremely efficient for dehydration of alcohols, effectively lowering the energy barrier as much as possible for an endothermic reaction without yielding a significant concentration of other side products.

Flattened cortical maps of cerebral function in the rat: a region-of-interest approach to data sampling, analysis and display.

We describe a method for the measurement, analysis and display of cerebral cortical data obtained from coronal brain sections of the adult rat. In this method, regions-of-interest (ROI) are selected in the cortical mantle in a semiautomated fashion using a radial grid overlay, spaced in 15 degrees intervals from the midline. ROI measurements of intensity are mapped on a flattened two-dimensional surface.

Habitat characteristics and eggshell distribution of the salt marsh mosquito, Aedes vigilax, in marshes in subtropical Eastern Australia.

Research at 10 locations in coastal subtropical Queensland, Australia, has shown that salt marshes contained heterogeneous distributions of eggshells of the pest and vector mosquito Aedes vigilax (Skuse) (Diptera:Culicidae). The eggshell distribution was related to specific vegetation assemblages, with a mix of the grass, Sporobolus virginicus (L.) Kunth (Poales: Poaceae), and the beaded glasswort, Sarcocornia quinqueflora (Bunge ex (Ung.

Mapping protein-protein interactions with phage-displayed combinatorial peptide libraries.

This unit describes the process and analysis of affinity selecting bacteriophage M13 from libraries displaying combinatorial peptides fused to either a minor or major capsid protein. Direct affinity selection uses target protein bound to a microtiter plate followed by purification of selected phage by ELISA. Alternatively, there is a bead-based affinity selection method.

Formation of supercooled liquid solutions from nanoscale amorphous solid films of methanol and ethanol.

Molecular beam techniques are used to create layered nanoscale composite films of amorphous methanol and ethanol at 20 K. The films are then heated, and temperature programed desorption and infrared spectroscopy are used to observe the mixing, desorption, and crystallization behavior from the initially unmixed amorphous layers. We find that the initially unmixed amorphous layers completely intermix to form a deeply supercooled liquid solution after heating above T(g).

Adsorption, desorption, and diffusion of nitrogen in a model nanoporous material. II. Diffusion limited kinetics in amorphous solid water.

The adsorption, desorption, and diffusion kinetics of N2 on thick (up to approximately 9 microm) porous films of amorphous solid water (ASW) films were studied using molecular beam techniques and temperature programmed desorption. Porous ASW films were grown on Pt(111) at low temperature (<30 K) from a collimated H2O beam at glancing incident angles. In thin films (<1 microm), the desorption kinetics are well described by a model that assumes rapid and uniform N2 distribution throughout the film.

Adsorption, desorption, and diffusion of nitrogen in a model nanoporous material. I. Surface limited desorption kinetics in amorphous solid water.

The adsorption and desorption kinetics of N2 on porous amorphous solid water (ASW) films were studied using molecular beam techniques, temperature programed desorption (TPD), and reflection-absorption infrared spectroscopy. The ASW films were grown on Pt(111) at 23 K by ballistic deposition from a collimated H2O beam at various incident angles to control the film porosity. The experimental results show that the N2 condensation coefficient is essentially unity until near saturation, independent of the ASW film thickness indicating that N2 transport within the porous films is rapid.

Plasma pharmacokinetics and oral bioavailability of 3,4,5,6-tetrahydrouridine, a cytidine deaminase inhibitor, in mice.

Cytidine analogues such as cytosine arabinoside, gemcitabine, decitabine, 5-azacytidine, 5-fluoro-2'-deoxycytidine and 5-chloro-2'-deoxycytidine undergo rapid catabolism by cytidine deaminase (CD). 3,4,5,6-tetrahydrouridine (THU) is a potent CD inhibitor that has been applied preclinically and clinically as a modulator of cytidine analogue metabolism. However, THU pharmacokinetics has not been fully characterized, which has impaired the optimal preclinical evaluation and clinical use of THU.

Predicting the age of mosquitoes using transcriptional profiles.

The use of transcriptional profiles for predicting mosquito age is a novel solution for the longstanding problem of determining the age of field-caught mosquitoes. Female mosquito age is of central importance to the transmission of a range of human pathogens. The transcriptional age-grading protocol we present here was developed in Aedes aegypti, principally as a research tool.

Control of arbovirus vector Verrallina funerea (Diptera: Culicidae) in southeast Queensland, Australia.

In Australia, the brackish water mosquito Verrallina funerea (Theobald) (Diptera: Culicidae) is a serious pest and vector of Ross River and Barmah Forest viruses in coastal areas in the northeast of the continent. We report on the first extensive evaluation of the efficacy of various pesticides against this species, including laboratory dose-response assays and small plot field trials. In the laboratory, Ve.

Imaging intrinsic diffusion of bridge-bonded oxygen vacancies on TiO2(110).

We report the first measurements and calculations of the intrinsic mobility of bridge-bonded oxygen (BBO) vacancies on a rutile TiO2(110). The sequences of isothermal (340-420 K) scanning tunneling microscope images show that BBO vacancies migrate along BBO rows. The hopping rate increases exponentially with increasing temperature with an experimental activation energy of 1.

Critical evaluation of quantitative sampling methods for Aedes aegypti (Diptera: Culicidae) immatures in water storage containers in Vietnam.

In response to an identified paucity of information on the size and composition of immature Aedes aegypti (L.) (Diptera: Culicidae) populations in large field containers, we assessed net sampling and pumping/sieving methods for estimating and enumerating third (III)/fourth (IV) instar and pupal populations. Sweep net detection thresholds (number above which > or = 90% chance of a positive sample) were < or = 28 immatures for seven different container types (115-3000 liter jars and tanks) in the laboratory, and mean recovery percentages varied by container type (6.

Crystalline ice growth on Pt(111) and Pd(111): nonwetting growth on a hydrophobic water monolayer.

The growth of crystalline ice films on Pt(111) and Pd(111) is investigated using temperature programed desorption of the water films and of rare gases adsorbed on the water films. The water monolayer wets both Pt(111) and Pd(111) at all temperatures investigated [e.g.

Sublethal effects of mosquito larvicides on swimming performance of larvivorous fish Melanotaenia duboulayi (Atheriniformes: Melanotaeniidae).

Laboratory studies were conducted to determine the sublethal effects of exposure to selected larvicides on the critical swimming speed (Ucrit) of crimson-spotted rainbowfish, Melanotaenia duboulayi (Castlenau). This native fish is common throughout southeastern Queensland, and it is increasingly being distributed as a biological control agent of mosquitoes. The selected larvicides included, two organophosphate (OP) compounds (temephos and pirimiphos-methyl), two microbial larvicides (Bacillus thuringiensis spp.

Mosquito feeding patterns and natural infection of vertebrates with Ross River and Barmah Forest viruses in Brisbane, Australia.

Host feeding patterns of mosquitoes were assessed through the identification of 865 blood meals collected from Brisbane during 2000-2001. Under natural conditions, mosquito feeding (including that of Culex annulirostris, Aedes vigilax, and Aedes notoscriptus) was primarily on dogs (37.4%), but also on birds (18.

n-alkanes on Pt(111) and on C(0001)Pt(111): chain length dependence of kinetic desorption parameters.

We have measured the desorption of seven small n-alkanes (C(N)H(2N+2), N=1-4,6,8,10) from the Pt(111) and C(0001) surfaces by temperature programed desorption. We compare these results to our recent study of the desorption kinetics of these molecules on MgO(100) [J. Chem.