Assessment of Chicken Fecal Contamination Using Microbial Source Tracking (MST) and Environmental DNA (eDNA) Profiling in Silway River, Philippines.

The Silway River has historically failed to meet safe fecal coliform levels due to improper waste disposal. The river mouth is located in General Santos City, the tuna capital of the Philippines and a leading producer of hogs, cattle, and poultry. The buildup of contaminants due to direct discharge of waste from chicken farms and existing water quality conditions has led to higher fecal matter in the Silway River.

Effect of monsoonal rainfall and tides on salinity intrusion and mixing dynamics in a macrotidal estuary.

Studies on the temporal and spatial variations of estuarine hydrodynamics, particularly those focusing on the combination of extreme and transition periods in the estuary with seasonal fluctuation of discharge, are rarely reported. Due to its importance, this study investigates the effect of rainfall and tide on the salinity intrusion and mixing conditions in the monsoon-affected macrotidal Tanintharyi River estuary (TRE), Myanmar, during the period of 2017-2019. The maximum salinity intrusion and partially mixed to well-mixed conditions were found during the neap-spring tidal cycles of dry seasons.

Understanding stratification and turnover dynamics of a tropical lake using extensive field observations and 3D hydrodynamic simulations.

The stratification and turnover dynamics of a tropical lake were evaluated using field observations and 3D hydrodynamic simulations. Located in the Philippines, Sampaloc Lake is a 104-ha and 27-m deep volcanic crater lake with enclosed watershed, which is at risk of the impacts of intensive aquaculture, rapid urbanization and climate change. Temperature, dissolved oxygen (DO) and chlorophyll-a (Chl-a) were measured at seven sampling stations using a multiprobe.

Factors contributing to the minimum water column stability and timing of the winter turnover in the Ogouchi reservoir.

Turnover in lakes and reservoirs causes circulation in the water column from the bottom to the surface when the water column stability becomes low. Previous studies commonly mentioned that turnover occurs when stratification indices become small, but the threshold is rarely discussed. While turnover phenomena have been extensively studied by evaluating changes in bottom dissolved oxygen (DO), the relationship between the disappearance of hypoxia and water temperature indices has not been determined.

Analysing the performance of the NARX model for forecasting the water level in the Chikugo River estuary, Japan.

Estuaries are dynamic environments which are driven by various natural processes like river discharge, tides, waves, influx of saline water and sediments, etc. These ecosystems are the most sensitive to sea level rise and fluctuations in river discharge associated with climate change. A direct response of sea level rise and river discharge can be observed in the water level of estuaries.

Impacts of sustainable management on the spatial distributions of erosion susceptibility and probable sediment yield in a mixed-forested watershed.

Forest management practices play multifaceted roles in enhancing the geophysical properties that affect raindrop erosion in the watershed, and consequently, sediment deposition in the reservoir. The current work attempts to integrate empirical and physically-based modeling approaches to quantify the impacts of forest conservation on erosion risk and potential sediment accumulation in the mixed-forested Ogouchi Dam watershed in Japan. The reliability of the empirical model for estimating the total erodibility coefficient (TEr), as a function of various forest properties, was evaluated by applying the mathematical expression to multiple forest conditions and comparing the values to field-measured soil erosion rates.

Phytoplankton habitats and size distribution during a neap-spring transition in the highly turbid macrotidal Chikugo River estuary.

The effect of neap-spring transition on the spatial and temporal changes in the cell size distribution of different phytoplankton species and their size-based habitats distribution were investigated in the highly turbid macrotidal Chikugo River estuary, Japan in 2021. The estuarine mixing changed from stratified to well-mixed over the transition from neap to spring tides and saltwater (1-5) intruded until 17 km with negligible effect from river discharge. The suspended sediment concentration (SSC) was low (<40 mg L) during neap tide and highest (1000 mg L) during spring tide associated with strong mixing, which led to the formation of an estuarine turbidity maximum (ETM) zone between 8 and 12 km.

Environmental DNA preserved in marine sediment for detecting jellyfish blooms after a tsunami.

Environmental DNA (eDNA) can be a powerful tool for detecting the distribution and abundance of target species. This study aimed to test the longevity of eDNA in marine sediment through a tank experiment and to use this information to reconstruct past faunal occurrence. In the tank experiment, juvenile jack mackerel (Trachurus japonicus) were kept in flow-through tanks with marine sediment for two weeks.

Thermal stratification responses of a monomictic reservoir under different seasons and operation schemes.

This study investigates the thermal stratification responses of a monomictic reservoir operated under different facilities. The analysis of 60-year long data showed that the reservoir's thermal regime varies with season and withdrawal scheme and is affected by upstream reach control through the vertical curtain. Isothermal conditions exist during winter (December-March) while stratification onsets in spring (starting April), intensifies in summer (August) and weakens during fall (October-November).

Erosion and sedimentation pattern of fine sediments and its physical characteristics in a macrotidal estuary.

The seasonal and fortnightly erosion and sedimentation pattern as well as the bonding characteristics of the mud deposit at the estuarine turbidity maximum (ETM) zone of the macrotidal Chikugo River estuarine channel were studied during 2005-2008 using the periodical topographic surveys and mud sampling along with continuous monitoring of water level, turbidity and flow velocity. The results revealed that the estuary was influenced by the tidal forcing during the dry season. This tidal forcing accelerated the net landward sediment transport and sedimentation takes place in the estuarine channel.

Direct measurement of secondary circulation in a meandering macrotidal estuary.

Secondary circulation, which induces the typical helical flow motion along a curved channel, is responsible for the complex morphodynamic processes in fluvial streams and estuaries with meandering nature. Classical secondary circulation has been extensively documented through flume experiments and numerical simulations but field observations about this phenomenon are scarce and only limited to few channel cross-sections. In this study, intensive measurements of flow velocities were performed using a vessel-mounted ADCP in order to illustrate the spatial distribution of classical secondary circulation in a meandering macrotidal estuary for both flood and ebb phases.

A new freshwater shrimp species of the genus Palaemon Weber, 1795 (Decapoda: Caridea: Palaemonidae) from northeastern Japan.

The palaemonid shrimp genus Palaemon Weber 1795 is currently represented by 87 species worldwide, of which 36 species inhabit freshwater environments. In this study, we describe a new species of the genus, P. septemtrionalis, primarily based on material collected from rivers in Miyagi Prefecture, Tohoku District, northeastern Japan.

Effect of neap-spring hydrodynamics on salt and suspended sediment transport in multi-branched urban estuaries.

Unique neap and spring tide hydrodynamic features were studied in the estuarine areas of multi-branched urban rivers in Tokyo, Japan. Intensive measurements of salinity, turbidity, dissolved oxygen, velocity, particulate organic matter (POM), and nutrients were conducted for 13h in five stations simultaneously on July 3 and July 11, 2017. Water sampling, analysis and calculations of salt and sediment transport were performed.

Seasonal morphodynamic evolution in a meandering channel of a macrotidal estuary.

The spatio-temporal morphodynamics in relation to the fortnightly tidal variations and seasonal river discharge variations in a meandering estuarine channel were investigated. Intensive topographic surveys (longitudinal and transverse) every 3-4 months using a digital sonar system equipped with a differential global positioning system and continuous monitoring of salinity and turbidity with moored instruments were carried out during 2009-2012 in the upstream section of the highly turbid macrotidal Chikugo River estuary, Japan. The results revealed that the tidal flow dominated in the estuary for most of the year except for the rainy season in which river flow dominates.

Germination fluctuation of toxic Alexandrium fundyense and A. pacificum cysts and the relationship with bloom occurrences in Kesennuma Bay, Japan.

While cyst germination may be an important factor for the initiation of harmful/toxic blooms, assessments of the fluctuation in phytoplankton cyst germination, from bottom sediments to water columns, are rare in situ due to lack of technology that can detect germinated cells in natural bottom sediments. This study introduces a simple mesocosm method, modeled after previous in situ methods, to measure the germination of plankton resting stage cells. Using this method, seasonal changes in germination fluxes of toxic dinoflagellates resting cysts, specifically Alexandrium fundyense (A.

Recovery of Coastal Fauna after the 2011 Tsunami in Japan as Determined by Bimonthly Underwater Visual Censuses Conducted over Five Years.

Massive tsunamis induce catastrophic disturbance in marine ecosystems, yet they can provide unique opportunities to observe the process of regeneration. Here, we report the recovery of fauna after the 2011 tsunami in northeast Japan based on underwater visual censuses performed every two months over five years. Both total fish abundance and species richness increased from the first to the second year after the tsunami followed by stabilization in the following years.