Signal analysis and classification methods for the calcium transient data of stem cell-derived cardiomyocytes.

Calcium cycling is crucial in the excitation-contraction coupling of cardiomyocytes, and therefore has a key role in cardiac functionality. Cardiac disorders and different drugs alter the calcium transients of cardiomyocytes and can cause serious dysfunction of the heart. New insights into this biochemical phenomena can be achieved by studying and analyzing calcium transients.

On computation of calcium cycling anomalies in cardiomyocytes data.

Induced pluripotent stem cell (iPSC) lines derived from skin fibroblasts of patients suffering from cardiac disorders were differentiated to cardiomyocytes and used to generate a data set of Ca(2+) transients of 136 recordings. The objective was to separate normal signals for later medical research from abnormal signals. We constructed a signal analysis procedure to detect peaks representing calcium cycling in signals and another procedure to classify them into either normal or abnormal peaks.

Machine learning approach to an otoneurological classification problem.

In this paper we applied altogether 13 classification methods to otoneurological disease classification. The main point was to use Half-Against-Half (HAH) architecture in classification. HAH structure was used with Support Vector Machines (SVMs), k-Nearest Neighbour (k-NN) method and Naïve Bayes (NB) methods.

Clustering and summarising association rules mined from phenotype, genotype and environmental data concerning age-related hearing impairment.

In this study, we examine the applicability of association rules for analysing high-dimensional data concerning age-related hearing impairment (ARHI). The ARHI data of the study contain hundreds of variables concerning phenotype, genotype and environmental factors. The number of association rules produced from the data is too large for manual exploration in the raw and furthermore, the rules are overlapping.

Applying one-vs-one and one-vs-all classifiers in k-nearest neighbour method and support vector machines to an otoneurological multi-class problem.

We studied how the splitting of a multi-class classification problem into multiple binary classification tasks, like One-vs-One (OVO) and One-vs-All (OVA), affects the predictive accuracy of disease classes. Classifiers were tested with an otoneurological data using 10-fold cross-validation 10 times with k-Nearest Neighbour (k-NN) method and Support Vector Machines (SVM). The results showed that the use of multiple binary classifiers improves the classification accuracies of disease classes compared to one multi-class classifier.

Machine learning method for knowledge discovery experimented with otoneurological data.

We have been interested in developing an otoneurological decision support system that supports diagnostics of vertigo diseases. In this study, we concentrate on testing its inference mechanism and knowledge discovery method. Knowledge is presented as patterns of classes.