Publications by authors named "Katarina Muchova"

During sporulation, Bacillus subtilis forms an asymmetric septum, dividing the cell into two compartments, a mother cell and a forespore. The site of asymmetric septation is linked to the membrane where FtsZ and SpoIIE initiate the formation of the Z-ring and the E-ring, respectively. These rings then serve as a scaffold for the other cell division and peptidoglycan synthesizing proteins needed to build the septum.

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An amendment to this paper has been published and can be accessed via a link at the top of the paper.

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Bacterial nanotubes are membranous structures that have been reported to function as conduits between cells to exchange DNA, proteins, and nutrients. Here, we investigate the morphology and formation of bacterial nanotubes using Bacillus subtilis. We show that nanotube formation is associated with stress conditions, and is highly sensitive to the cells' genetic background, growth phase, and sample preparation methods.

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Article Synopsis
  • This study employs advanced imaging techniques to investigate the role of the SpoIIE protein in the development of bacteria during asymmetric cell division and sporulation.
  • Using single-molecule optical proteomics, researchers discovered that SpoIIE forms tetramers and clusters, with its quantity increasing as the bacteria progress in sporulation, impacting gene expression and protein activity.
  • The findings highlight the complexity of SpoIIE's functions and suggest that its organization allows for versatile roles in cellular processes, illustrating the benefits of live cell tracking for understanding biological mechanisms.
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Article Synopsis
  • Peptidoglycan is essential for determining bacterial cell shape and is crucial for cell elongation and division, particularly in rod-shaped bacteria.
  • During sporulation, an asymmetric cell division occurs, involving a unique septum that differs from the vegetative septum both in structure and protein composition.
  • The study highlights a direct relationship between the sporulation protein SpoIIE and GpsB, suggesting they form a multi-protein complex that connects peptidoglycan synthesis to the morphogenetic changes needed for forespore formation.
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Article Synopsis
  • - Bacillus subtilis is a rod-shaped bacterium that divides symmetrically at mid-cell during vegetative growth and can also divide asymmetrically during sporulation.
  • - The asymmetric division during sporulation creates a smaller forespore and a larger mother cell, which is essential for different gene expression.
  • - While we have a good understanding of the cell division process during vegetative growth, knowledge about how the site of asymmetric division is determined during sporulation is still limited.
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Probably one of the most controversial questions about the cell division of Bacillus subtilis, a rod-shaped bacterium, concerns the mechanism that ensures correct division septum placement-at mid-cell during vegetative growth but closer to one end during sporulation. In general, bacteria multiply by binary fission, in which the division septum forms almost exactly at the cell centre. How the division machinery achieves such accuracy is a question of continuing interest.

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Vegetative cell division in takes place precisely at the middle of the cell to ensure that two viable daughter cells are formed. The first event in cell division is the positioning of the FtsZ Z-ring at the correct site. This is controlled by the coordinated action of both negative and positive regulators.

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Article Synopsis
  • The process of sporulation in Bacillus subtilis begins with the formation of an asymmetric septum, which is crucial for activating the transcription factor σF in one of the daughter cells.
  • The protein SpoIIE is essential for this activation, but the study highlights the additional role of the morphogenic protein RodZ in both the asymmetric septum formation and σF activation.
  • RodZ interacts directly with SpoIIE, suggesting that they may form a complex that coordinates the changes in cell shape and triggers the necessary developmental steps for spore formation.
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The bacterial cell wall ensures the structural integrity of the cell and is the main determinant of cell shape. In Bacillus subtilis, three cytoskeletal proteins, MreB, MreBH and Mbl, are thought to play a crucial role in maintaining the rod cell shape. These proteins are thought to be linked with the transmembrane proteins MreC, MreD and RodA, the peptidoglycan hydrolases, and the penicillin-binding proteins that are essential for peptidoglycan elongation.

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Membranes are vital structures for cellular life forms. As thin, hydrophobic films, they provide a physical barrier separating the aqueous cytoplasm from the outside world or from the interiors of other cellular compartments. They maintain a selective permeability for the import and export of water-soluble compounds, enabling the living cell to maintain a stable chemical environment for biological processes.

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The Min system plays an important role in ensuring that cell division occurs at mid-cell in rod-shaped bacteria. In Escherichia coli, pole-to-pole oscillation of the Min proteins specifically inhibits polar septation. This system also prevents polar division in Bacillus subtilis during vegetative growth; however, the Min proteins do not oscillate in this organism.

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The cell wall is responsible for cell integrity and the maintenance of cell shape in bacteria. The Gram-positive bacterial cell wall consists of a thick peptidoglycan layer located on the outside of the cytoplasmic membrane. Bacterial cell membranes, like eukaryotic cell membranes, are known to contain domains of specific lipid and protein composition.

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The previously identified spoIIS locus encodes a toxin-antitoxin system in Bacillus subtilis. It comprises two genes, spoIISA encoding a toxin and spoIISB encoding an antitoxin, which lies adjacent to each other on the chromosome. Each of the spoIIS coding sequences is preceded by a promoter region and the two genes together constitute an operon.

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Bacterial membranes are known to form domains with specific lipid compositions and functions. Recently, using membrane binding fluorescent dyes, lipid spiral structures extending along the long axis of the cell were detected. These spirals were absent when the synthesis of phosphatidylglycerol and cardiolipin was disrupted, suggesting that the spirals are enriched in anionic phospholipids.

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Bacillus subtilis is considered to have great potential as a host for the production and secretion of recombinant proteins. Many different expression systems have been developed for B. subtilis.

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In both rod-shaped Bacillus subtilis and Escherichia coli cells, Min proteins are involved in the regulation of division septa formation. In E. coli, dynamic oscillation of MinCD inhibitory complex and MinE, a topological specificity protein, prevents improper polar septation.

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The fluid mosaic model of membrane structure has been revised in recent years as it has become evident that domains of different lipid composition are present in eukaryotic and prokaryotic cells. Using membrane binding fluorescent dyes, we demonstrate the presence of lipid spirals extending along the long axis of cells of the rod-shaped bacterium Bacillus subtilis. These spiral structures are absent from cells in which the synthesis of phosphatidylglycerol is disrupted, suggesting an enrichment in anionic phospholipids.

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SpoIISA and SpoIISB proteins from Bacillus subtilis belong to a recently described bacterial programmed-cell death system. The current work demonstrates that the toxin-antitoxin module is also functional in Escherichia coli cells, where the expression of SpoIISA toxin leads to transient growth arrest coupled with cell lysis, and SpoIISA-induced death can be prevented by coexpression of its cognate antitoxin, SpoIISB. Escherichia coli cells appear to be able to escape the SpoIISA killing by activation of a specific, as yet unidentified protease that cleaves out the cytosolic part of the protein.

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The response regulator proteins of two-component systems mediate many adaptations of bacteria to their ever-changing environment. Most response regulators are transcription factors that alter the level of transcription of specific sets of genes. Activation of response regulators requires their phosphorylation on a conserved aspartate residue by a cognate sensor kinase.

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The cell division protein DivIVA is predicted to be a coiled-coil, tropomyosin-like protein, that self-associates both in vivo and in vitro into oligomers of up to 10-12 monomers. A simple and quick screen for conditions supporting the stable oligomer structure has been developed revealing that DivIVA forms a homogeneous oligomer in the presence of PEGs (PEG 4 K or PEG 8K and PEG 1K).

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