Dataset of assembly and annotation of the mitogenomes of and captured from Yucatán, México.

is a species complex, and its members are responsible for the transmission of , the causative agent of Chagas disease. We present the assembly and annotation of the mitogenome of the (Latreille, 1811) and Lima-Cordón & Justi, 2019. The mitochondrial genomes were successfully sequenced using the Illumina Nextseq 500 platform, 2×75 cycles, and 5 million reads per sample.