Publications by authors named "Karl Soop"

is a species-rich ectomycorrhizal genus containing taxa that exhibit agaricoid or sequestrate basidiome morphologies. In New Zealand, one of the most recognizable and common species is the purple sequestrate fungus, . We used genome skimming of the almost 100-y-old type specimen from to obtain the nuc rDNA internal transcribed spacer region ITS1-5.

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Mushroom-forming fungi (Agaricomycetes) have the greatest morphological diversity and complexity of any group of fungi. They have radiated into most niches and fulfil diverse roles in the ecosystem, including wood decomposers, pathogens or mycorrhizal mutualists. Despite the importance of mushroom-forming fungi, large-scale patterns of their evolutionary history are poorly known, in part due to the lack of a comprehensive and dated molecular phylogeny.

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Article Synopsis
  • Two proposals have been put forward to allow DNA sequences to be used as types for naming certain fungi, which could fundamentally alter the definition of nomenclatural types and lead to various issues in scientific reproducibility and nomenclatural instability.
  • The authors argue against these proposals, suggesting that they would not effectively address the challenges of naming taxa based solely on DNA and propose instead that formulas for naming candidate taxa could be a better solution without changing existing nomenclature rules.
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Different distance-based threshold selection approaches were used to assess and compare use of the internal transcribed spacer (ITS) region to distinguish among 901 Cortinarius species represented by >3000 collections. Sources of error associated with genetic markers and selection approaches were explored and evaluated using MOTUs from genus and lineage based-alignments. Our study indicates that 1%-2% more species can be distinguished by using the full-length ITS barcode as compared to either the ITS1 or ITS2 regions alone.

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A new genus Psathyloma is described based on collections of agarics from New Zealand. We describe two new species in the genus, Ps. leucocarpum and Ps.

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