Publications by authors named "Kanako Kogashi"

The internal hollow space of carbon nanotubes provides a unique nanometre-sized space to capture various molecular entities. The inner space circumfused by sp-carbon networks can also encapsulate diamondoid molecules to afford sp/sp-hybrid nanocarbon peapods that have recently emerged as unique nanostructures. In this study, the sp/sp-hybrid peapods have been mimicked by adopting a cylindrical molecule and the smallest diamondoid, i.

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Rigid molecular cylinders with a 1 nm diameter were synthesized by assembling arylene panels with Pt-mediated macrocylization. Chrysenylene panels that previously participated in tetrameric macrocyclization were contorted by the addition of two benzo groups on the sides to form dibenzochrysenylene, which allowed for a reduction in the numbers of participating panels to three. Consequently, narrowed cyclochrysenylene congeners were obtained.

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Article Synopsis
  • Next-generation sequencing of single-stranded DNA (ssDNA) is gaining popularity across various research areas, prompting the development of efficient methods for adaptor-tagging ssDNA.
  • A new technique called TCS ligation combines terminal deoxynucleotidyl transferase (TdT) with copper-catalyzed azide-alkyne cycloaddition (CuAAC) to effectively tag ssDNA.
  • The study demonstrates the successful application of TCS ligation in creating a sequencing library, marking it as a promising approach for future sequencing technologies.
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A sextuple helix molecule possessing four cove regions of helicene and two axes of biaryls was synthesized. The entropy-driven self-assembly in solution was determined by concentration- and temperature-dependent NMR spectra, which also revealed unique dynamics of isomerization involving structural changes at the cove regions. Unexpectedly, the assembly retarded the isomerization in solution, and the sextuple helix structure was rigidified.

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A method for the synthesis of chimeric oligonucleotides was developed to incorporate purine nucleobases and multiple triazole linkers in natural, phosphate-linked structures of RNA. A solution-phase synthesis method for triazole-linked RNA oligomers via copper-catalyzed azide-alkyne cycloaddition reaction was optimized and tolerated purine nucleobases and protecting groups for further transformations. Three RNA trinucleotides with 5'-protected hydroxy and 3'-phosphoramidite groups were prepared, and one congener with a representative sequence was subjected to automated, solid-phase phosphoramidite synthesis.

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Chimeric RNA oligonucleotides with an artificial triazole linker were synthesized using solution-phase click chemistry and solid-phase automated synthesis. Scalable synthesis methods for jointing units for the chimeric structure have been developed, and after click-coupling of the jointing units with triazole linkers, a series of chimeric oligonucleotides was prepared by utilizing the well-established phosphoramidite method for the elongation. The series of chimeric 21-mer oligonucleotides that possessed the triazole linker at different strands and positions allowed for a screening study of the RNA interference to clarify the preference of the triazole modifications in small-interfering RNA molecules.

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