Publications by authors named "KULIK N"

Article Synopsis
  • The synthesis of nitriles is crucial in organic chemistry, but traditional methods often involve toxic reagents and harsh conditions.
  • Enzymes like aldoxime dehydratases (Oxds) offer safer alternatives, with recent research highlighting their potential and the limited number of Oxds studied in detail.
  • This review discusses the overexpression, purification, and application of Oxds, and evaluates their industrial prospects compared to other nitrile synthesis innovations.
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  • - The research presents a 3-step enzymatic method to convert waste chitin, found in food industry byproducts, into valuable chitooligomers with a degree of polymerization (DP) between 6 to 11.
  • - The process begins with hydrolyzing chitin using engineered fungal chitinase, followed by an extension step using a β--acetylhexosaminidase variant to enhance yields up to 57%.
  • - Finally, chitooligomers with DP 6 and 7 undergo enzymatic deacetylation, resulting in bioactive chitooligomers that could be used as natural pesticides for sustainable agriculture.
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  • - A new class of compounds has been identified as effective inhibitors of the enzyme O-GlcNAcase, which is important for removing sugar molecules from proteins.
  • - These inhibitors are unique because they are structurally related to the enzyme's transition state, meaning they fit well into the enzyme's active site, and they can bind reversibly.
  • - The compounds are easy to make, highly active, stable, and non-toxic, making them potential candidates for developing treatments aimed at reducing tau phosphorylation, a key factor in Alzheimer's disease.
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The binding of human galectins by glycomimetic inhibitors is a promising therapeutic approach. The structurally distinct group of tandem-repeat galectins has scarcely been studied so far, and there is hardly any knowledge on their ligand specificity or their inhibitory potential, particularly concerning non-natural carbohydrates. Here, we present the synthesis of a library of seven 3-O-disubstituted thiodigalactoside-derived glycomimetics and their affinity to two tandem-repeat galectins, Gal-8 and Gal-9.

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Article Synopsis
  • - Nitriles are useful in various applications, such as solvents, building blocks, and flavor components, and their synthesis through aldoxime dehydratase (Oxd) is gaining attention for its efficiency compared to traditional methods.
  • - This study investigates the immobilization of His-tagged Oxds on metal affinity resins, finding that Ni-NTA resin is more effective than Talon resin for enzyme attachment, leading to enhanced synthesis of beneficial compounds like phenylacetonitrile and E-cinnamonitrile for the fragrance industry.
  • - The results indicated that immobilized OxdBr1 enzyme demonstrated excellent recyclability and productivity, achieving 100% conversion and a substantial yield of phenylacetonitrile,
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Flavonoids and their glycosides are abundant in many plant-based foods. The (de)glycosylation of flavonoids by retaining glycoside hydrolases has recently attracted much interest in basic and applied research, including the possibility of altering the glycosylation pattern of flavonoids. Research in this area is driven by significant differences in physicochemical, organoleptic, and bioactive properties between flavonoid aglycones and their glycosylated counterparts.

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Hyaluronic acid, a naturally occurring carbohydrate biopolymer in human tissues, finds wide application in cosmetics, medicine, and material science. Its anionic properties play a crucial role in its interaction with positively charged macromolecules and ions. Among these macromolecules, positively charged arginine molecules or polyarginine peptides demonstrate potential in drug delivery when complexed with hyaluronan.

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A new class of compounds inhibiting de-O-glycosylation of proteins has been identified. Highly substituted diaminocyclopentanes are impressively selective reversible non-transition state O-β-N-acetyl-d-glucosaminidase (O-GlcNAcase) inhibitors. The ease of preparative access and remarkable biological activities provide highly viable leads for the development of anti-tau-phosphorylation agents with a view to eventually ameliorating Alzheimer's disease.

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Grocery store environments are recognized as one of the most crucial community settings for developing and maintaining healthy nutritional behaviors in children. This is especially true for disadvantaged ethnic minority families, such as immigrants, who reside in the Detroit Metropolitan area and have historically experienced inequities that result in poor health outcomes. Rates of obesity and type II diabetes have affected Detroit 38% more than the rest of the state and nationwide.

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Background: Eating patterns such as breakfast consumption and fruit and vegetable intake have been associated with academic achievement and cognitive function.

Method: The purpose of this study was to learn more about psychological (emotion-driven eating) and behavioral (over-eating) eating patterns and motives, and the roles of body image, academic achievement (reading and math), and social supports (peer acceptance and school attachment), among 378 fourth-grade students (55% boys) from 14 classrooms across 6 schools within a large Midwestern urban area.

Results: Results were analyzed through a 2-group (male and female) path analysis.

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The marketing of Sugar-Sweetened Beverages (SSBs) within grocers is an obesogenic factor that negatively impacts children's nutritional behavior, specifically for people from racial and ethnic minority groups, such as immigrants. We aimed to develop and employ a methodology that more precisely assesses the availability, price, and promotion of SSBs to young immigrant children within independently owned grocery stores. A case comparison design was used to explore the differences in the grocery store landscape of SSB marketing by conducting an enhanced Nutrition Environment Measures Survey-SSB (NEMS-SSB) within 30 grocery stores in the Hispanic and Latino enclaves in Southwest Detroit, in the Arab and Chaldean enclaves in North-central Detroit, and in Warren, Hamtramck, and Dearborn, in comparison with 48 grocers in Metro Detroit.

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In baker's yeast (), Trk1, a member of the superfamily of K-transporters (SKT), is the main K uptake system under conditions when its concentration in the environment is low. Structurally, Trk1 is made up of four domains, each similar and homologous to a K-channel α subunit. Because most K-channels are proteins containing four channel-building α subunits, Trk1 could be functional as a monomer.

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Article Synopsis
  • - The study focused on mapping the sequence space of aldoxime dehydratases (Oxds), enzymes important for synthesizing nitriles, highlighting the scarcity of characterized Oxds from microbes, particularly in fungi.
  • - A new enzyme, OxdFv, was isolated from Fusarium vanettenii and found to have low similarity to other characterized Oxds, with a unique catalytic triad and specific mutations leading to different activities.
  • - OxdFv demonstrated significant activity under aerobic conditions, favoring (aryl)aliphatic aldoximes and requiring certain additives for optimal performance, establishing it as the first characterized Oxd of the REE type.
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Specific salts effect is well-known on stability and solubility of proteins, however, relatively limited knowledge is known regarding the effect on catalytic properties of enzymes. Here, we examined the effect of four sodium anions on thermal stability and catalytic properties of trypsin and binding of the fluorescent probe, p-aminobenzamidine (PAB), to the enzyme. We show that the specific anions effect on trypsin properties agrees with the localization of the anions in the Hofmeister series.

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We developed potent and selective aminocyclopentane-derived inhibitors of human -acetyl-β-D-glucosaminidase (OGA) implicated in Alzheimer's disease. For example compound 13 was a nanomolar OGA inhibitor with 92 000-fold selectivity over human HexB. It was non-toxic and increased protein -GlcNAcylation in the culture of murine neural cells, showing new alternatives in the treatment of tauopathies.

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Little is known about the influence of home or community garden (HCG) access on adolescent health. The objective of this study was to determine the association between adolescent self-rated health, nutrition knowledge, attitudes, and intake with HCG access. Urban high school students (n = 401) completed a questionnaire prior to a nutrition education intervention.

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A collaborative partnership launched the Great Grocer Project (GGP) in March 2021 in Detroit, Michigan where health inequities, including deaths due to COVID-19, have historically been politically determined and informed by socially entrenched norms. Institutional and structural racism has contributed to a lack of diversity in store ownership among Detroit grocers and limited access to high-quality, affordable healthy foods as well as disparate food insecurity among Detroit residents. The GGP seeks to promote Detroit's healthy grocers to improve community health and economic vitality through research, programs, and policies that have the potential to advance health equity.

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Article Synopsis
  • The dataset includes chemical parameters of Lake Onego water collected across different seasons from 2019 to 2021.
  • It measures various factors such as ion concentrations, organic matter levels, nutrients, heavy metals, and water quality indicators using multiple analytical methods.
  • The results can be used for comparing Lake Onego's hydrochemical characteristics with other large lakes and assessing overall water quality in specific areas of the lake.
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Two libraries of mono- and dimeric pyrrolidine iminosugars were synthesized by CuAAC and (thio)urea-bond-forming reactions from the respective azido/aminohexylpyrrolidine iminosugar precursors. The resulting monomeric and dimeric compounds were screened for inhibition of β-N-acetylglucosaminidase from Jack beans, the plant ortholog of human lysosomal hexosaminidases. A selection of the best inhibitors of these libraries was then evaluated against human lysosomal β-N-acetylhexosaminidase B (hHexB) and human nucleocytoplasmic β-N-acetylglucosaminidase (hOGA).

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New 1-cetyl-4-aza-1-azoniabicyclo[2.2.2]octane bromide complexes with copper(II) bromide and lanthanum(III) nitrate were characterized using dynamic light scattering and transmission electron microscopy, with self-assembly and the morphological behavior elucidated.

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Ionic liquids (ILs) have become nearly ubiquitous solvents and their interactions with biomolecules has been a focus of study. Here, we used the fluorescence emission of DAPI, a groove binding fluorophore, coupled with molecular dynamics (MD) simulations to report on interactions between imidazolium chloride ([Im]) ionic liquids and a synthetic DNA oligonucleotide composed entirely of T/A bases (7(TA)) to elucidate the effects ILs on a model DNA duplex. Spectral shifts on the order of 500-1000 cm, spectral broadening (~1000 cm), and excitation and emission intensity ratio changes combine to give evidence of an increased DAPI environment heterogeneity on added IL.

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Structure-activity relationships are important for the design of biocides and sanitizers. During the spread of resistant strains of pathogenic microbes, insights into the correlation between structure and activity become especially significant. The most commonly used biocides are nitrogen-containing compounds; the phosphorus-containing ones have been studied to a lesser extent.

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Water-soluble trialkylammonium isatin-3-hydrazone derivatives bearing phenolic substituent were easily synthesized with high yields. XRD studies confirmed the presence of these compounds as trans-(Z)-isomers in a crystal. It was shown that an increase in the lipophilicity of the cationic center leads to an increase in activity against Gram-positive bacteria Staphylococcus aureus and Bacillus cereus, including methicillin-resistant Staphylococcus aureus (MRSA) strains.

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The Best Food Forward (BFF) project aims to provide multiple nutrition supports and interventions to improve family food security (FS) and health outcomes associated with FS within two metropolitan school districts. A quasi-experimental time-series design guided a multilevel evaluation for BFF through surveys, biometric screenings, focus groups, and observations among a random sample of caregiver-child dyads. FS, utilization of school meal programs, and nutrition behaviors were observed and analyzed at three time points: preintervention, postintervention pre-COVID-19, and postintervention post-COVID-19.

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