Crystallization in heat-treated fluorochlorozirconate glasses.

Crystallization phenomena of fluorochlorozirconate glasses were investigated by means of differential scanning calorimetry and inelastic neutron scattering. The precipitation of barium chloride nanoparticles from the glass matrix upon heat treatment was found to be suppressed when re-melting the glass with a reducing agent but not if the agent was present in the initial synthesis. Addition of small amounts of oxide to the predominantly fluoride melt was found to maintain the presence of nanoparticles but not to induce the predicted phase transition of the barium chloride nanoparticles from hexagonal to orthorhombic structure.

The 9-methyl group of retinal is essential for rapid Meta II decay and phototransduction quenching in red cones.

Cone photoreceptors of the vertebrate retina terminate their response to light much faster than rod photoreceptors. However, the molecular mechanisms underlying this rapid response termination in cones are poorly understood. The experiments presented here tested two related hypotheses: first, that the rapid decay rate of metarhodopsin (Meta) II in red-sensitive cones depends on interactions between the 9-methyl group of retinal and the opsin part of the pigment molecule, and second, that rapid Meta II decay is critical for rapid recovery from saturation of red-sensitive cones after exposure to bright light.

Selective amplification of maxicircle classes during the life cycle of Leishmania major.

The kinetoplast genome contains several thousands of minicircles of various sequence classes and several scores of maxicircles. We demonstrated that maxicircles are heterogeneous in clonal cultures of Leishmania major, and, therefore, probably heterogeneous (heteroplasmic) within the kinetoplast. Sequence heterogeneity was observed in a non-coding fragment upstream of the 12S rRNA gene.

Substrate recognition of anthrax lethal factor examined by combinatorial and pre-steady-state kinetic approaches.

Lethal factor (LF), a zinc-dependent protease of high specificity produced by Bacillus anthracis, is the effector component of the binary toxin that causes death in anthrax. New therapeutics targeting the toxin are required to reduce systemic anthrax-related fatalities. In particular, new insights into the LF catalytic mechanism will be useful for the development of LF inhibitors.

Inelastic neutron scattering study of confined surface water on rutile nanoparticles.

The vibrational density of states (VDOS) for water confined on the surface of rutile-TiO(2) nanoparticles has been extracted from low temperature inelastic neutron scattering spectra. Two rutile-TiO(2) nanoparticle samples that differ in their respective levels of hydration, namely TiO(2) x 0.37 H(2)O (1) and TiO(2) x 0.

[Characteristics of the immune response to the lethal toxin of Bacillus anthracis].

We and other authors have recently shown that the pattern of the immune response to components of anthrax, the Bacillus anthracis lethal toxin, is complex. In addition to neutralizing antibodies, the antitoxin antibody pool contains antibodies enhancing the toxin lethal action. We mapped the epitopes in the protective antigen that are responsible for the induction of both antibody types.

Heat capacity of α-AlH(3) and α-AlD(3) at temperatures up to 1000 K.

The densest α modification of AlH(3) and AlD(3) is thermodynamically stable at high hydrogen pressures. At ambient pressure, α-AlH(3) and α-AlD(3) rapidly and irreversibly decompose to Al and H(2) or D(2) gas when heated to about 420 and 520 K, respectively. In the present paper, the heat capacities at constant volume (C(V)) and at constant pressure (C(P)) are calculated for α-AlH(3) and α-AlD(3) at a pressure of 1 atm and temperatures 0-1000 K using the phonon densities of states determined earlier by inelastic neutron scattering at helium temperatures (Kolesnikov et al 2007 Phys.

Vibrational dynamics of amorphous beryllium hydride and lithium beryllium hydrides.

The vibrational density of states of amorphous beryllium hydride (a-BeH2) and lithium beryllium hydrides have been studied using inelastic neutron scattering, infrared, and Raman spectroscopies. The positions of the symmetrical (120-180 meV) and antisymmetrical (200-260 meV) Be-H stretching modes and those of the H-Be-H bending mode (50-120 meV) have been determined and the results discussed and compared with recent theoretical calculations. With the addition of lithium to the beryllium hydride network, the vibrational bands are shifted to lower energies, indicating a less rigid network.

Anti-idiotypic antibody mimics proteolytic function of parent antigen.

Functional imaging of subtilisin Carlsberg active center by the idiotypic network yielded a catalytic anti-idiotypic antibody with endopeptidase, amidase, and esterase activities. A monoclonal antibody inhibitory to subtilisin (Ab1 5-H4) was employed as the template for guiding the idiotypic network to produce the catalytic anti-idiotypic Ab2 6B8-E12. Proteolytic activity of 6B8-E12 was demonstrated by zymography using self-quenched fluorescein-BSA conjugate and in a coupled assay detecting Ab2-dependent RNase A inactivation.

Dynamics of water confined on a TiO2 (anatase) surface.

Inelastic neutron scattering has been employed to probe the vibrational density of states of water confined by an oxide surface, namely, nanoparticles of the anatase polymorph of TiO2. The heat capacity of confined water has been measured by adiabatic calorimetry and compared with values derived from the vibrational density of states. Both inelastic neutron scattering and calorimetry demonstrate restricted mobility and lower heat capacity and entropy of confined water as compared to the bulk.

[Genetic polymorphism of Commander Islands polar foxes Alopex lagopus semenovi Ognev, 1931 and Alopex lagopus beringiensis Merriam, 1902].

The polymorphism of the mitochondrial DNA (mtDNA) control region sequence was examined in 30 polar foxes from Bering Island and 30 polar foxes from Mednyi Island. Seven haplotypes were revealed in polar foxes from Bering Island, and one, in polar foxes from Mednyi Island. The age of divergence of these populations (12 000 +/- 600 years) was calculated based on a fragment of the D-loop.

Observation of a dynamic crossover in water confined in double-wall carbon nanotubes.

High-resolution quasielastic neutron scattering spectroscopy was used to measure H2O hydrated double-wall carbon nanotubes (DWNT). The measurements were made at a series of temperatures from 250 K down to 150 K. The relaxing-cage model was used to analyze the quasielastic spectra.

Construction and analysis of Leishmania tarentolae transgenic strains free of selection markers.

The trypanosomatid protozoan Leishmania tarentolae has been extensively used as a model system for studying causative agents of several tropical diseases and more recently as a host for recombinant protein production. Here we analyze the rates of partial or complete deletions of expression cassettes integrated into small ribosomal RNA and tubulin gene clusters as well as into ornithine decarboxylase gene of L. tarentolae.

Lossless compression of color map images by context tree modeling.

Significant lossless compression results of color map images have been obtained by dividing the color maps into layers and by compressing the binary layers separately using an optimized context tree model that exploits interlayer dependencies. Even though the use of a binary alphabet simplifies the context tree construction and exploits spatial dependencies efficiently, it is expected that an equivalent or better result would be obtained by operating directly on the color image without layer separation. In this paper, we extend the previous context-tree-based method to operate on color values instead of binary layers.

Anomalous behavior of proton zero point motion in water confined in carbon nanotubes.

The momentum distribution of the protons in ice Ih, ice VI, high density amorphous ice, and water in carbon nanotubes has been measured using deep inelastic neutron scattering. We find that at 5 K the kinetic energy of the protons is 35 meV less than that in ice Ih at the same temperature, and the high momentum tail of the distribution, characteristic of the molecular covalent bond, is not present. We observe a phase transition between 230 and 268 K to a phase that does resemble ice Ih.

Visual cycle and its metabolic support in gecko photoreceptors.

Photoreceptors of nocturnal geckos are transmuted cones that acquired rod morphological and physiological properties but retained cone-type phototransduction proteins. We have used microspectrophotometry and microfluorometry of solitary isolated green-sensitive photoreceptors of Tokay gecko to study the initial stages of the visual cycle within these cells. These stages are the photolysis of the visual pigment, the reduction of all-trans retinal to all-trans retinol, and the clearance of all-trans retinol from the outer segment (OS) into the interphotoreceptor space.

Radically different maxicircle classes within the same kinetoplast: an artefact or a novel feature of the kinetoplast genome?

We discuss here some results which suggest that radically different maxicircle classes coexist within the same kinetoplast. These data, although tentative and incomplete, may provide a new outlook on the kinetoplast genome structure and expression.

Conserved repeats in the kinetoplast maxicircle divergent region of Leishmania sp. and Leptomonas seymouri.

The maxicircle control region [also termed divergent region (DR)] composed of various repeat elements remains the most poorly studied part of the kinetoplast genome. Only three extensive DR sequences demonstrating no significant similarity were available for trypanosomatids (Leishmania tarentolae, Crithidia oncopelti, Trypanosoma brucei). Recently, extensive DR sequences have been obtained for Leishmania major and Trypanosoma cruzi.

Origins of isotopomeric polymorphism.

The complex formed between 4-methylpyridine and pentachlorophenol (4MPPCP) crystallises in a triclinic space group. If the same complex is synthesized from deuterated pentachlorophenol, it crystallizes in an entirely different monoclinic polymorph. Using solid-state NMR of samples synthesized with a full range of deuteration levels, crystallized from solution or the melt, and in the presence or absence of seeds, we have confirmed that the isotopomers indeed have different thermodynamically stable crystal structures.

Experimental observations of water-framework interactions in a hydrated microporous aluminum phosphate.

Differential scanning calorimetry of the hydrated, microporous aluminum phosphate AlPO-14 shows two distinct water losses between room temperature and 120 degrees C, indicating the presence of two types of water in the solid. Multiple-quantum magic angle spinning (MQMAS) (27)Al NMR shows that, while in dehydrated AlPO-14 all aluminum is found in tetrahedral sites, on hydration a significant proportion of the aluminum increases its coordination number to 6. This accounts for the presence of tightly bound water.

Visual cycle: Dependence of retinol production and removal on photoproduct decay and cell morphology.

The visual cycle is a chain of biochemical reactions that regenerate visual pigment following exposure to light. Initial steps, the liberation of all-trans retinal and its reduction to all-trans retinol by retinol dehydrogenase (RDH), take place in photoreceptors. We performed comparative microspectrophotometric and microfluorometric measurements on a variety of rod and cone photoreceptors isolated from salamander retinae to correlate the rates of photoproduct decay and retinol production.