Publications by authors named "KIRITA Y"

Introduction: To identify prognostic biomarkers that could predict how well patients will respond to lenvatinib/pembrolizumab (LEN/PEM). The utility of certain inflammatory biomarkers in endometrial liquid-based cytology (LBC) or peripheral blood samples, such as neutrophil counts, lymphocyte counts, and neutrophil-to-lymphocyte ratio (NLR) were explored.

Methods: The study included 25 patients with advanced or recurrent endometrial cancer who had received LEN/PEM between August 2018 and March 2024.

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  • Acute kidney injury (AKI) leads to damage in kidney epithelial cells, and while the body attempts to repair this, incomplete repair can result in chronic kidney disease (CKD).
  • Researchers created a detailed single-nucleus multiomic atlas from mouse models of AKI to uncover how changes in gene regulation contribute to the transition from AKI to CKD, focusing on proinflammatory pathway activation.
  • The study also included human AKI samples, finding that the transcription factor CREB5 plays a key role in both successful and faulty repair processes, revealing important insights into cell behavior following injury.
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Introduction: A reduced salt intake is a vital lifestyle modification in the management of hypertension. Initiatives aimed at decreasing the intake of salt are based on the preference by humans for a salt taste. Salt intake behavior appears to be affected by the balance between attraction to a low salt taste and aversion to a high salt taste.

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In the aftermath of acute kidney injury (AKI), surviving proximal tubule epithelia repopulate injured tubules to promote repair. However, a portion of cells fail to repair [termed failed-repair proximal tubule cells (FR-PTCs)] and exert ongoing proinflammatory and profibrotic effects. To better understand the molecular drivers of the FR-PTC state, we reanalyzed a mouse ischemia-reperfusion injury single-nucleus RNA-sequencing (snRNA-seq) atlas to identify Traf2 and Nck interacting kinase () to be exclusively expressed in FR-PTCs but not in healthy or acutely injured proximal tubules after AKI (2 and 6 wk) in mice.

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Introduction: Patients with polymerase epsilon (POLE) mutation (POLEmut) subtype, MMR-deficient (MMR-d) subtype as classified by The Cancer Genome Atlas (TCGA), and a high tumor mutation burden (TMB-high) potentially benefit from immunotherapy. However, characteristics of the cytological morphology within these populations remain unknown.

Methods: DNA extracted from formalin-fixed paraffin-embedded tissues was subjected to next-generation sequencing analysis.

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  • * Researchers created a mouse model that mimics advanced DKD and found significant tissue damage, inflammation, and high levels of VCAM1 in the kidneys, which reflects the condition in humans.
  • * The drug luseogliflozin was shown to improve kidney health by reducing tissue hypoxia and inflammation, highlighting the potential of VCAM1 as a marker and SGLT2 inhibitors as a treatment option for advanced DKD.
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Acute kidney injury (AKI) causes epithelial damage followed by subsequent repair. While successful repair restores kidney function, this process is often incomplete and can lead to chronic kidney disease (CKD) in a process called failed repair. To better understand the epigenetic reprogramming driving this AKI-to-CKD transition we generated a single nucleus multiomic atlas for the full mouse AKI time course, consisting of ~280,000 single nucleus transcriptomes and epigenomes.

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  • SARS-CoV-2 is known for its rapid mutations, which allow it to evade neutralizing antibodies, a challenge highlighted by the reduced effectiveness of the antibody UT28K against the Omicron BA.1 variant.
  • Researchers designed a modified version called UT28K-RD, targeting specific mutations to restore its neutralizing capability against Omicron BA.1, and validated its effectiveness through various lab experiments.
  • The study showcases the successful design of antibodies tailored to combat viral mutations and suggests a promising direction for developing new treatments for highly mutable viruses like SARS-CoV-2.
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SpCas9 and AsCas12a are widely utilized as genome-editing tools in human cells. However, their relatively large size poses a limitation for delivery by cargo-size-limited adeno-associated virus (AAV) vectors. The type V-F Cas12f from Acidibacillus sulfuroxidans is exceptionally compact (422 amino acids) and has been harnessed as a compact genome-editing tool.

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  • SARS-CoV-2 Omicron subvariants have developed the ability to evade detection by certain antibodies that target their receptor-binding sites (RBS).
  • Researchers identified a key area, Y489, that is vulnerable to broadly neutralizing antibodies and revealed how multiple antibodies interact with both Y489 and F486, linking this to the emergence of resistant subvariants.
  • A newly designed antibody (NIV-10/FD03) effectively neutralized the XBB variant and shows promise for developing therapies resistant to viral evolution and escape mechanisms.
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  • * Traditional treatments aimed at reducing fat in the liver have been ineffective, as they can worsen liver inflammation by releasing toxic fatty acids.
  • * Researchers developed a new method using a synthetic protein to enhance "lipophagy," a process that helps remove fat from liver cells, showing promising results in mouse models and identifying existing drugs, alpelisib and digoxin, that can activate this process to prevent NASH progression.
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  • Streptozotocin (STZ) is mainly used as an anti-cancer drug for treating neuroendocrine tumors (NETs) but can also cause DNA damage in kidney cells, leading to injury.
  • Research showed that this kidney damage is linked to the activation of the p53 signaling pathway and reduced membrane transporters in tubular epithelial cells.
  • Treatment with an SGLT2 inhibitor can help protect kidney cells from STZ-induced damage without affecting the drug's effectiveness on pancreatic β-cells, suggesting its potential as a preventative treatment for kidney injury in NET patients.
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  • Pulmonary arterial hypertension (PAH) is a serious disease marked by increased pressure in the pulmonary arteries caused by changes in the structure of these blood vessels.
  • Research shows that aging in endothelial cells (ECs) negatively impacts PAH by affecting nearby smooth muscle cells (SMCs) through a process called juxtacrine interaction.
  • Inhibiting Notch signaling, which is activated by senescent ECs, can mitigate the effects on SMCs and improve PAH symptoms, highlighting a potential treatment strategy, especially for older patients.
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The major concern with COVID-19 therapeutic monoclonal antibodies is the loss of efficacy against continuously emerging variants of SARS-CoV-2. To predict antibody efficacy against future Omicron subvariants, we conducted deep mutational scanning (DMS) encompassing all single mutations of the receptor-binding domain of the BA.2 strain utilizing an inverted infection assay with an ACE2-harboring virus and library spike-expressing cells.

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  • Understanding kidney repair after acute kidney injury (AKI) involves studying how certain kidney cells respond, particularly the differences between adaptive (healing) and maladaptive (problematic) responses.
  • Researchers used advanced techniques to trace cell lineage and analyze gene expression in kidney cells post-AKI, finding that a large number of kidney cells enter the cell cycle in response to injury.
  • They discovered that some damaged proximal tubule cells (PTCs) can persist for months after AKI, indicating long-term consequences, and identified distinct regulatory features that drive both healing and ongoing injury responses in these cells.
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Based on recent clinical trials using sodium-glucose co-transporter 2 inhibitor (SGLT2i) demonstrating the significant improvement of outcomes of diabetic kidney disease (DKD), the paradigm shift from "glomerulocentric" to "tubule centric" pathophysiology in DKD progression has been highlighted. Several responsible mechanisms for renoprotective effects by SGLT2i have been proposed recently, but the changes in proximal tubule-specific gene expression by SGLT2i in diabetic mice have not been elucidated. We report the analysis of the proximal tubular-specific pathway, demonstrating the downregulation of oxidative phosphorylation in dapagliflozin-treated mice, a type 2 diabetic model.

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Kidney hypertrophy is a common clinical feature in patients with diabetes and is associated with poor renal outcomes. Initial cell proliferation followed by cellular hypertrophy are considered the responsible mechanisms for diabetic kidney hypertrophy. However, whether similar responses against hyperglycemia continue in the chronic phase in diabetes is unclear.

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  • Heart failure often leads to kidney failure, and when both occur together, they significantly increase mortality rates in patients.
  • Recent research indicates that kidney injury in heart failure patients is primarily due to increased kidney venous pressure rather than just reduced blood flow from the heart.
  • A new mouse model study found that decreased blood flow in kidney capillaries, caused by kidney congestion and activated NF-κB signaling, worsens kidney damage, suggesting that targeting NF-κB could be a promising treatment for paired heart and kidney failures.
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Cisplatin is a commonly used anticancer drug, but nephrotoxicity is a dose-limiting adverse effect. Recent experimental and clinical observations have demonstrated that multiple injections of cisplatin induce the transition to chronic kidney disease; however, the underlying mechanisms remain unclear. We found that multiple injections of higher doses of cisplatin in a shorter interval affected the severity of kidney injury, causing kidney fibrosis to develop at a later time point.

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SARS-CoV-2 has mutated during the global pandemic leading to viral adaptation to medications and vaccinations. Here we describe an engineered human virus receptor, ACE2, by mutagenesis and screening for binding to the receptor binding domain (RBD). Three cycles of random mutagenesis and cell sorting achieved sub-nanomolar affinity to RBD.

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Tubular atrophy is a common pathological feature of kidney fibrosis. Although fibroblasts play a predominant role in tissue fibrosis, the role of repairing tubular epithelia in tubular atrophy is unclear. We demonstrated the essential role of focal adhesion kinase (FAK)-mediated intratubular epithelial-mesenchymal transition (EMT) in the pathogenesis of tubular atrophy after severe ischemia-reperfusion injury (IRI).

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  • The study investigates the cellular processes involved in the recovery or fibrosis of kidneys following acute kidney injury (AKI) using single nucleus RNA sequencing in a mouse model.
  • Researchers identified a specific state of proximal tubule cells that are proinflammatory and profibrotic, which is associated with unsuccessful repair after injury.
  • The findings point to this failed-repair cell state (FR-PTC) as a potential target for therapies aimed at improving kidney recovery, as it is also observable in other injury models and human cases.
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The DNA damage response after kidney injury induces cell cycle arrest in renal tubular epithelial cells, resulting in the secretion of pro-fibrotic cytokines, thereby promoting interstitial fibrosis in a paracrine manner. Phosphorylation of ataxia-telangiectasia mutated (ATM) is the initial step in the DNA damage response and subsequent cell cycle arrest; however, the effects of ATM inhibition on the injured kidney have not been explored. Pharmacological ATM inhibition by KU55933 in cisplatin-treated mice did not ameliorate, but instead exacerbated cisplatin-induced DNA damage and tubular injury, thereby increasing mortality.

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Diabetic nephropathy is characterized by damage to both the glomerulus and tubulointerstitium, but relatively little is known about accompanying cell-specific changes in gene expression. We performed unbiased single-nucleus RNA sequencing (snRNA-seq) on cryopreserved human diabetic kidney samples to generate 23,980 single-nucleus transcriptomes from 3 control and 3 early diabetic nephropathy samples. All major cell types of the kidney were represented in the final dataset.

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