Computer-aided scoring of () gene amplification status in breast cancer.

Background: Identification of HER2 protein overexpression and/or amplification of the gene are required to qualify breast cancer patients for HER2 targeted therapies. hybridization (ISH) assays that identify gene amplification function as a stand-alone test for determination of HER2 status and rely on the manual quantification of the number of genes and copies of chromosome 17 to determine amplification.

Methods: To assist pathologists, we have developed the uPath HER2 Dual ISH Image Analysis for Breast (uPath HER2 DISH IA) algorithm, as an adjunctive aid in the determination of gene status in breast cancer specimens.

Fast noise reduction in computed tomography for improved 3-D visualization.

Computed tomography (CT) has a trend towards higher resolution and higher noise. This development has increased the interest in anisotropic smoothing techniques for CT, which aim to reduce noise while preserving structures of interest. However, existing smoothing techniques are slow, which makes clinical application difficult.

Image reconstruction by convolution with symmetrical piecewise nth-order polynomial kernels.

The reconstruction of images is an important operation in many applications. From sampling theory, it is well known that the sine-function is the ideal interpolation kernel which, however, cannot be used in practice. In order to be able to obtain an acceptable reconstruction, both in terms of computational speed and mathematical precision, it is required to design a kernel that is of finite extent and resembles the sinc-function as much as possible.

Integrated volume visualization of functional image data and anatomical surfaces using normal fusion.

A generic method, called normal fusion, for integrated three-dimensional (3D) visualization of functional data with surfaces extracted from anatomical image data is described. The first part of the normal fusion method derives quantitative values from functional input data by sampling the latter along a path determined by the (inward) normal of a surface extracted from anatomical data; the functional information is thereby projected onto the anatomical surface independently of the viewpoint. Fusion of the anatomical and functional information is then performed with a color-encoding scheme based on the HSV model.

Advances in three-dimensional diagnostic radiology.

The maturity of current 3D rendering software in combination with recent developments in computer vision techniques enable an exciting range of applications for the visualisation, measurement and interactive manipulation of volumetric data, relevant both for diagnostic imaging and for anatomy. This paper reviews recent work in this area from the Image Sciences Institute at Utrecht University. The processes that yield a useful visual presentation are sequential.