Differentiation of Cherry leaf roll virus isolates from various host plants by immunocapture-reverse transcription-polymerase chain reaction-restriction fragment length polymorphism according to phylogenetic relations.

A restriction fragment length polymorphism assay (RFLP) was developed to differentiate Cherry leaf roll virus (CLRV) isolates according to phylogenetic clades by examining restriction patterns from partial 3' non-coding region (NCR) genomic fragments (approx. 420bp). The 3' NCR fragment from 43 CLRV isolates belonging to different phylogenetic groups were compared after restriction analysis with the endonucleases Bsp143I, AluI, RsaI, EcoRI and Eco130I, and another 23 isolates were analyzed by computer assisted restriction analysis.