Molecular epidemiological characteristics of the virus in 96 children with acute diarrhea in Changdu of Tibet, China.

Objectives: To study the molecular epidemiological characteristics of the virus in children with acute viral diarrhea in Changdu of Tibet, China.

Methods: Fecal specimens were collected from 96 children with acute diarrhea who visited the People's Hospital of Changdu, Tibet, from November 2018 to November 2020 and were tested for adenovirus, norovirus, astrovirus, sapovirus, and rotavirus. Gene sequencing was performed for the genotypes of these viruses.

Interaction variability shapes succession of synthetic microbial ecosystems.

Cellular interactions are a major driver for the assembly and functioning of microbial communities. Their strengths are shown to be highly variable in nature; however, it is unclear how such variations regulate community behaviors. Here we construct synthetic Lactococcus lactis consortia and mathematical models to elucidate the role of interaction variability in ecosystem succession and to further determine if casting variability into modeling empowers bottom-up predictions.

Identification and characterization of core sludge and biofilm microbiota in anaerobic membrane bioreactors.

An analysis of sludge (i.e., 63 samples) and biofilm (i.

Synthetic, Context-Dependent Microbial Consortium of Predator and Prey.

Synthetic microbial consortia are a rapidly growing area of synthetic biology. So far, most consortia are designed without considering their environments; however, in nature, microbial interactions are constantly modulated by cellular contexts, which, in principle, can dramatically alter community behaviors. Here we present the construction, validation, and characterization of an engineered bacterial predator-prey consortium that involves a chloramphenicol (CM)-mediated, context-dependent cellular interaction.

Pair Interaction of Catalytical Sphere Dimers in Chemically Active Media.

We study the pair dynamics of two self-propelled sphere dimers in the chemically active medium in which a cubic autocatalytic chemical reaction takes place. Concentration gradient around the dimer, created by reactions occurring on the catalytic sphere surface and responsible for the self-propulsion, is greatly influenced by the chemical activities of the environment. Consequently, the pair dynamics of two dimers mediated by the concentration field are affected.

Population-Dynamic Modeling of Bacterial Horizontal Gene Transfer by Natural Transformation.

Natural transformation is a major mechanism of horizontal gene transfer (HGT) and plays an essential role in bacterial adaptation, evolution, and speciation. Although its molecular underpinnings have been increasingly revealed, natural transformation is not well characterized in terms of its quantitative ecological roles. Here, by using Neisseria gonorrhoeae as an example, we developed a population-dynamic model for natural transformation and analyzed its dynamic characteristics with nonlinear tools and simulations.

Cues for Diotic and Dichotic Detection of a 500-Hz Tone in Noise Vary with Hearing Loss.

Hearing in noise is a challenge for all listeners, especially for those with hearing loss. This study compares cues used for detection of a low-frequency tone in noise by older listeners with and without hearing loss to those of younger listeners with normal hearing. Performance varies significantly across different reproducible, or "frozen," masker waveforms.

Tone-in-noise detection using envelope cues: comparison of signal-processing-based and physiological models.

Tone-in-noise detection tasks with reproducible noise maskers have been used to identify cues that listeners use to detect signals in noisy environments. Previous studies have shown that energy, envelope, and fine-structure cues are significantly correlated to listeners' performance for detection of a 500-Hz tone in noise. In this study, envelope cues were examined for both diotic and dichotic tone-in-noise detection using both stimulus-based signal processing and physiological models.

Binaural detection with narrowband and wideband reproducible noise maskers. IV. Models using interaural time, level, and envelope differences.

The addition of out-of-phase tones to in-phase noises results in dynamic interaural level difference (ILD) and interaural time difference (ITD) cues for the dichotic tone-in-noise detection task. Several models have been used to predict listeners' detection performance based on ILD, ITD, or different combinations of the two cues. The models can be tested using detection performance from an ensemble of reproducible-noise maskers.

Slow and steady wins the race: a bacterial exploitative competition strategy in fluctuating environments.

One promising frontier for synthetic biology is the development of synthetic ecologies, whereby interacting species form an additional layer of connectivity for engineered gene circuits. Toward this goal, an important step is to understand different types of bacterial interactions in natural settings, among which competition is the most prevalent. By constructing a two-species population dynamics model, here, we mimicked bacterial growth in nature with resource-limited fluctuating environments and searched for optimal strategies for bacterial exploitative competition.

Predictions of diotic tone-in-noise detection based on a nonlinear optimal combination of energy, envelope, and fine-structure cues.

Tone-in-noise detection has been studied for decades; however, it is not completely understood what cue or cues are used by listeners for this task. Model predictions based on energy in the critical band are generally more successful than those based on temporal cues, except when the energy cue is not available. Nevertheless, neither energy nor temporal cues can explain the predictable variance for all listeners.

Dynamical phase of driven colloidal systems with short-range attraction and long-range repulsion.

We study the nonequilibrium dynamics of colloidal system with short-range depletion attraction and screened electrostatic repulsion on a disordered substrate. We find a growth-melting process of the clusters as the temperature is increased. By strengthening the screened electrostatic repulsion, a depinning transition from moving cluster to plastic flow is observed, which is characterized by a peak in threshold depinning force.

Diffusion over a fluctuating barrier in underdamped dynamics.

We apply a Langevin model by imposing additive and multiplicative noises to study thermally activated diffusion over a fluctuating barrier in underdamped dynamics. The barrier fluctuation is characterized by Gaussian colored noise with exponential correlation. We present the exact solutions for the first and second moments.

Noise-induced anomalous diffusion over a periodically modulated saddle.

We study analytically and numerically the anomalous diffusion across periodically modulated parabolic potential within Langevin and Fokker-Planck descriptions. We find that the probability of particles passing over the saddle is affected strikingly by the periodical modulation with average zero bias. Particularly, the initial phase plays an important role in the modulation effect.

Suppression of spirals and turbulence in inhomogeneous excitable media.

Suppression of spiral and turbulence in inhomogeneous media due to local heterogeneity with higher excitability is investigated numerically. When the inhomogeneity is small, control tactics by boundary periodic forcing (BPF) is effective against the existing spiral and turbulence. When the inhomogeneity of excitability is large, a rotating electric field (REF) is utilized to "smooth" regional heterogeneity based on driven synchronization.

Model study of prionlike folding behavior in aggregated proteins.

We investigate the folding behavior of protein sequences by numerically studying all sequences with a maximally compact lattice model through exhaustive enumeration. We get the prionlike behavior of protein folding. Individual proteins remaining stable in the isolated native state may change their conformations when they aggregate.

Medium effects on the selection of sequences folding into stable proteins in a simple model.

We study the medium effects on the selection of sequences in protein folding by taking into account surface potential in hydrophobic-polar model. Our numerical calculation demonstrates that the surface potential enhances the average gap for the highly designable structures. It also shows that the most stable structure may be no longer the most stable one if the medium is changed.

Role of chaos in one-dimensional heat conductivity.

We investigate the heat conduction in a quasi-one-dimensional gas model with various degrees of chaos. Our calculations indicate that the heat conductivity kappa is independent of system size when the chaos of the channel is strong enough. The different diffusion behaviors for the cases of chaotic and nonchaotic channels are also studied.