Publications by authors named "Julie Jacquemin"

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Article Synopsis
  • The genus Oryza serves as an important model for studying molecular evolution, revealing rapid species diversification alongside the emergence of new genetic elements and minimal large-scale chromosomal changes.
  • The research clarifies the complex phylogenetic history of Oryza, particularly within the 'AA' subclade of domesticated species, highlighting cases of introgression and the presence of disease resistance genes.
  • This study significantly advances rice research by releasing a comprehensive long-read genome assembly of IR 8 'Miracle Rice,' which played a crucial role in addressing famine during the Green Revolution in Asia.
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In analyzing gene families in the whole-genome sequences available for O. sativa (AA), O. glaberrima (AA), and O.

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The wild relatives of rice contain a virtually untapped reservoir of traits that can be used help drive the 21st century green revolution aimed at solving world food security issues by 2050. To better understand and exploit the 23 species of the Oryza genus the rice research community is developing foundational resources composed of: 1) reference genomes and transcriptomes for all 23 species; 2) advanced mapping populations for functional and breeding studies; and 3) in situ conservation sites for ecological, evolutionary and population genomics. To this end, 16 genome sequencing projects are currently underway, and all completed assemblies have been annotated; and several advanced mapping populations have been developed, and more will be generated, mapped, and phenotyped, to uncover useful alleles.

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Background: The role of gene duplication in the structural and functional evolution of genomes has been well documented. Analysis of complete rice (Oryza sativa) genome sequences suggested an ancient whole genome duplication, common to all the grasses, some 50-70 million years ago and a more conserved segmental duplication between the distal regions of the short arms of chromosomes 11 and 12, whose evolutionary history is controversial.

Results: We have carried out a comparative analysis of this duplication within the wild species of the genus Oryza, using a phylogenetic approach to specify its origin and evolutionary dynamics.

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