Polarimetric imaging microscopy for advanced inspection of vegetal tissues.

Optical microscopy techniques for plant inspection benefit from the fact that at least one of the multiple properties of light (intensity, phase, wavelength, polarization) may be modified by vegetal tissues. Paradoxically, polarimetric microscopy although being a mature technique in biophotonics, is not so commonly used in botany. Importantly, only specific polarimetric observables, as birefringence or dichroism, have some presence in botany studies, and other relevant metrics, as those based on depolarization, are underused.

Depolarizing metrics for plant samples imaging.

Optical methods, as fluorescence microscopy or hyperspectral imaging, are commonly used for plants visualization and characterization. Another powerful collection of optical techniques is the so-called polarimetry, widely used to enhance image contrast in multiple applications. In the botanical applications framework, in spite of some works have already highlighted the depolarizing print that plant structures left on input polarized beams, the potential of polarimetric methods has not been properly exploited.

Polarimetric imaging of biological tissues based on the indices of polarimetric purity.

We highlight the interest of using the indices of polarimetric purity (IPPs) to the inspection of biological tissues. The IPPs were recently proposed in the literature and they result in a further synthetization of the depolarizing properties of samples. Compared with standard polarimetric images of biological samples, IPP-based images lead to larger image contrast of some biological structures and to a further physical interpretation of the depolarizing mechanisms inherent to the samples.

Polarization gating based on Mueller matrices.

We present mathematical formulas generalizing polarization gating (PG) techniques. PG refers to a collection of imaging methods based on the combination of different controlled polarization channels. In particular, we show how using the measured Mueller matrix (MM) of a sample, a widespread number of PG configurations can be evaluated just from analytical expressions based on the MM coefficients.

Improved expressions for performance parameters for complex filters.

Improved expressions are given for the performance parameters for transverse and axial gains for complex pupil filters. These expressions can be used to predict the behavior of filters that give a small axial shift in the focal intensity maximum and also predict the changes in gain for different observation planes.

Simple expressions for performance parameters of complex filters, with applications to super-Gaussian phase filters.

To study the three-dimensional (3-D) behavior produced by complex filters, we have extended the expressions for the axial and the transverse gain to the case in which the best image plane is not near the paraxial focus. Super-Gaussian phase filters are proposed to control the 3-D image response of an optical system. Super-Gaussian phase filters depend on several parameters that modify the shape of the phase filter, producing tunable control of the 3-D response of the optical system.