Publications by authors named "Ju Song"

Microbial metabolites provide numerous benefits to the human body but can also contribute to diseases such as obesity, diabetes, cancer, and bone disorders. However, the role of imidazole propionate (ImP), a histidine-derived metabolite produced by the intestinal microbiome, in bone metabolism and the development of osteoporosis is still poorly understood. In this study, we investigated the role of ImP and its underlying mechanisms in regulating bone homeostasis.

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  • - The glycosylation profile of therapeutic proteins, especially sialylation, is important for their effectiveness and stability, particularly in fusion proteins used to treat angiogenic disorders.
  • - A mass spectrometry method was used to analyze sialylation levels in VEGFR-IgG fusion proteins by examining different fractions from production media, revealing varying sialylation levels.
  • - The study found that the overall sialylation levels matched the expected results from the different fractions, emphasizing the importance of LC-MS/MS-based analysis for quality control and consistency in biosimilar development.
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  • The study assessed the effectiveness of different sampling methods for next-generation sequencing (NGS) in lung cancer diagnostics, based on data from patients at Pusan National University Hospital.
  • Overall, NGS yielded a high success rate of 97.5% across 319 patients, with no significant differences in DNA sequencing success between surgical (98%) and nonsurgical (96.4%) methods.
  • However, surgical methods had a lower success rate for RNA sequencing (78%) compared to nonsurgical methods (92.3%), suggesting a need for improved protocols to mitigate RNA degradation during surgical sampling.
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Background: Endobronchial ultrasound-guided transbronchial needle aspiration (EBUS-TBNA) and endoscopic ultrasound with bronchoscope-guided fine needle aspiration (EUS-B-FNA) are minimally invasive procedures for the diagnosis and staging of lung cancer. This study aimed to investigate the additional diagnostic value of EUS-B-FNA following EBUS-TBNA.

Methods: We performed a systematic literature review of PubMed, Embase, and the Cochrane Central Register databases and extracted the studies reporting the implementation of the combined EBUS-TBNA/EUS-B-FNA.

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  • This text indicates that the article with the DOI 10.1016/j.omtn.2019.02.007 is being retracted.
  • A retraction means that the article is no longer considered valid or reliable for reference.
  • Readers should avoid using this article for their research or citations.
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Microbial interactions impact the functioning of microbial communities. However, microbial interactions within host-associated communities remain poorly understood. Here, we report that the beneficiary rhizobacterium Niallia sp.

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  • - Airborne particulate matter (PM) is a significant global health hazard linked to cardiovascular and respiratory diseases, highlighting the need for more personalized research beyond large epidemiological studies.
  • - Researchers found that PM exposure activates inflammatory and immune responses, significantly affecting signaling pathways and macrophage behavior in the respiratory system.
  • - The study emphasizes the importance of mitigating particulate air pollution to improve respiratory health, as individual PM types were shown to enhance immune responses in lung cells and animal models.
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Background: The clinical efficacy of roflumilast, an oral phosphodiesterase-4 inhibitor, has been demonstrated in patients with severe chronic obstructive pulmonary disease (COPD). However, roflumilast has shown frequent adverse drug reactions (ADRs). This study was performed to investigate the dosing strategy that will improve adherence to roflumilast in COPD.

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  • - The study explored genetic variants related to rheumatoid arthritis (RA) in 14 treatment-naïve RA patients and 5 healthy controls using whole-exome sequencing (WES) and T cell receptor (TCR) repertoire analysis.
  • - Some genetic variants were found, but their clinical significance needs further investigation; whereas, TCR diversity was lower in RA patients compared to healthy controls, but improved after DMARD treatment.
  • - The study showed a significant negative correlation between TCR diversity and disease measures, highlighting the importance of further research to confirm the findings in the context of RA pathogenesis.
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  • This study investigates the use of 16S rDNA next-generation sequencing (NGS) to improve the detection of bacterial infections in ascites fluid associated with liver cirrhosis.
  • The research involved 10 patients with suspected spontaneous bacterial peritonitis (SBP), comparing traditional ascites cultures with the advanced sequencing techniques.
  • Findings indicated that both methods showed low positivity rates and similar results, suggesting that the NGS method does not significantly enhance bacterial detection in ascitic fluid compared to conventional cultures.
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Background And Objective: Next-generation sequencing (NGS) analysis is considered standard for lung cancer diagnosis in clinical practice. Little is known about the feasibility of NGS using tumour tissue sampled with a 1.1 mm-diameter cryoprobe.

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Background: Lung dysfunction and high apolipoprotein B/apolipoprotein A-I (apoB/apoA-I) ratio are both recognized risk factors for cardiovascular disease. However, few studies have examined the association between the apoB/ApoA-I ratio and lung function. Therefore, we investigated whether this ratio is associated with decreased lung function in a large healthy cohort.

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Purpose: This project aimed to determine whether a supportive calculator that automates the vial selection process might offer a practical and efficient method of reducing pharmaceutical expenditures through minimizing preventable drug waste in outpatient pharmacy settings.

Summary: Drug waste is a substantial target of cost-saving efforts in the areas of oncology and autoimmune therapy, which involve use of a vast number of high-cost medications packaged in single-dose vials of varying strength. To facilitate selection of the optimal combination of medication vials and thereby minimize preventable drug waste, a Microsoft Excel-based calculator was developed for use by staff of a large oncology pharmacy network.

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Background: The role of combination treatments with two antifibrotic agents, pirfenidone and nintedanib, has been not established in idiopathic pulmonary fibrosis (IPF). This study was performed to investigate the safety and tolerability of combination antifibrotic treatment in patients with IPF.

Methods: We conducted a proportional meta-analysis and searched PubMed, EMBASE, and the Cochrane Central Register for relevant clinical trials.

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Despite extensive research on orchid reproductive strategies, the genetic studies of sex differentiation in the orchid family are still lacking. In this study, we compared three sexual phenotypes of bisexual flowers as well as female and male unisexual mutants. Through comparative transcriptomes, we analyzed the sex-biased differentially expressed genes (DEGs) and gene co-expression networks of sex organs (gynostemium and ovary) among them, identified the candidate genes of sex differentiation, and validated their expression by qRT-PCR.

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Defects in plasma membrane repair can lead to muscle and heart diseases in humans. Tripartite motif-containing protein (TRIM)72 (mitsugumin 53; MG53) has been determined to rapidly nucleate vesicles at the site of membrane damage, but the underlying molecular mechanisms remain poorly understood. Here we present the structure of Mus musculus TRIM72, a complete model of a TRIM E3 ubiquitin ligase.

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  • Particulate matter (PM) can cause serious respiratory issues by increasing oxidative stress and inflammation, but an extract called AGE shows potential protective effects against this.
  • In a study, AGE was found to significantly reduce inflammation markers in mouse lungs that were exposed to PM, decreasing inflammatory cell presence in fluid samples.
  • The study suggests that AGE mitigates lung inflammation by inhibiting harmful signaling pathways (NF-κB/MAPK) while boosting protective pathways (NRF2/HO-1), indicating its potential for preventing PM-related respiratory problems.
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Background/aims: Antimicrobial de-escalation (ADE) remains a challenging strategy in the treatment of pneumonia. We investigated the outcomes of ADE as measured by mortality and duration of the use of antibiotics in patients with culture- negative pneumonia.

Methods: We performed a systematic review and meta-analysis in accordance with PRISMA guidelines.

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Osteoporosis is a major public health concern, which requires novel therapeutic strategies to prevent or mitigate bone loss. Natural compounds have attracted attention as potential therapeutic agents due to their safety and efficacy. In this study, we investigated the regulatory activities of boeravinone B (BOB), a natural rotenoid isolated from the medicinal plant Boerhavia diffusa, on the differentiation of osteoclasts and mesenchymal stem cells (MSCs), the two main cell components responsible for bone remodeling.

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Recent advances in machine learning (ML) have facilitated its application to a wide range of systems, from complex to quantum. Reservoir computing algorithms have proven particularly effective for studying nonlinear dynamical systems that exhibit collective behaviors, such as synchronizations and chaotic phenomena, some of which still remain unclear. Here, we apply ML approaches to the Kuramoto model to address several intriguing problems, including identifying the transition point and criticality of a hybrid synchronization transition, predicting future chaotic behaviors, and understanding network structures from chaotic patterns.

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  • Chemotherapeutic agents like docetaxel can cause severe pain known as chemotherapy-induced peripheral neuropathy (CIPN), and this study focuses on how low-frequency median nerve stimulation (LFMNS) can help relieve that pain in mice.
  • Male ICR mice were given docetaxel to induce CIPN and then treated with LFMNS, with pain responses measured using specific filaments and BDNF protein levels evaluated in their nerve samples.
  • The results showed that LFMNS significantly reduced pain sensitivity and BDNF expression linked to CIPN, suggesting it could be a viable non-drug treatment for patients experiencing these symptoms.
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  • The shift in pharmaceutical manufacturing is moving towards continuous and intelligent processes, particularly in traditional Chinese medicine (TCM), enhancing efficiency and quality consistency.
  • Key technologies like material property characterization and process modeling are crucial for developing continuous manufacturing systems in TCM, emphasizing the need for high-speed, reliable equipment.
  • A maturity assessment model focusing on operation, equipment, process, and quality control continuity is proposed to guide the effective application of continuous manufacturing in TCM.
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  • - The study investigates the short-term outcomes of laparoscopic Hartmann reversal (LHR) versus open Hartmann reversal (OHR) using data from multiple healthcare institutions through a method called propensity score matching.
  • - Results showed that LHR significantly reduced the frequency of postoperative ileus (POI) and allowed patients to return to a solid diet and leave the hospital faster compared to those who underwent OHR.
  • - The findings suggest that LHR is a more effective surgical technique for quicker recovery after surgery, highlighting its benefits over OHR.
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