Publications by authors named "Joshua Koenig"

Allergic reactions to foods are primarily driven by allergen-binding immunoglobulin (Ig)E antibodies. IgE-expressing cells can be generated through direct switching from IgM to IgE or a sequential class switching pathway where activated B cells first switch to an intermediary isotype, most frequently IgG1, and then to IgE. It has been proposed that sequential class switch recombination is involved in augmenting the severity of allergic reactions, generating high affinity IgE, differentiation of IgE plasma cells, and in holding the memory of IgE responses.

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The iterative bleaching extends multiplexity (IBEX) Knowledge-Base is a central portal for researchers adopting IBEX and related 2D and 3D immunofluorescence imaging methods. The design of the Knowledge-Base is modeled after efforts in the open-source software community and includes three facets: a development platform (GitHub), static website, and service for data archiving. The Knowledge-Base facilitates the practice of open science throughout the research life cycle by providing validation data for recommended and non-recommended reagents, e.

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The underlying mechanisms used by the intestinal microbiota to shape disease outcomes of the host are poorly understood. Here, we show that the gut commensal protozoan, Tritrichomonas musculis (T.mu), remotely shapes the lung immune landscape to facilitate perivascular shielding of the airways by eosinophils.

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Article Synopsis
  • Idiopathic pulmonary fibrosis (IPF) is a severe lung disease marked by excessive scarring, leading to poor respiratory function and a need for new treatment strategies, particularly involving macrophages, the key immune cells in the lungs.
  • The study aimed to explore macrophage behavior in lung slices (PCLS), which are real lung tissues cultured in a lab, to better replicate the lung environment compared to isolated cells in vitro.
  • Results showed that a polarization cocktail of specific cytokines can induce macrophage markers related to lung fibrosis in PCLS without harming the tissue, demonstrating a promising model for studying macrophage roles in IPF.
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IgE antibodies raised against innocuous environmental antigens cause allergic diseases like allergic rhinitis, food allergy, and allergic asthma. While some allergies are often outgrown, others (peanut, shellfish, tree nut) are lifelong in the majority of individuals. Lifelong allergies are the result of persistent production of allergen-specific IgE.

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Iterative Bleaching Extends multipleXity (IBEX) is a versatile method for highly multiplexed imaging of diverse tissues. Based on open science principles, we created the IBEX Knowledge-Base, a resource for reagents, protocols and more, to empower innovation.

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Allergen-specific immunoglobulin E (IgE) antibodies mediate pathology in diseases such as allergic rhinitis and food allergy. Memory B cells (MBCs) contribute to circulating IgE by regenerating IgE-producing plasma cells upon allergen encounter. Here, we report a population of type 2-polarized MBCs defined as CD23, IL-4Rα, and CD32 at both the transcriptional and surface protein levels.

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B cells generate antibodies that provide protection from infection, but also cause pathology in autoimmune and allergic conditions. Antigen-specific B cells can be detected by binding their surface antibody receptors with native antigens conjugated to fluorescent probes, a technique that has revealed substantial insight into B cell activation and function. This protocol describes the process of generating fluorescent antigen tetramer probes and delineates a process of enriching large samples based on antigen-specificity for high-resolution analyses of the antigen-specific B cell repertoire.

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Antibody responses are critical for protection against pathogens. However, diseases such as allergic rhinitis or food allergy result from aberrant production of IgE antibodies against otherwise innocuous environmental antigens. The production of allergen-specific IgE requires interaction between B cells and CD4 T cells, and a granular understanding of these interactions is required to develop novel therapies for allergic disease.

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A series of landmark studies have provided conclusive evidence that the early administration of food allergens dramatically prevents the emergence of food allergy. One of the greatest remaining challenges is whether patients with established food allergy can return to health. This challenge is particularly pressing in the case of allergies against peanut, tree nuts, fish, and shellfish which are lifelong in most patients and may elicit severe reactions.

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Article Synopsis
  • - The current COVID-19 vaccines may be less effective against emerging SARS-CoV-2 variants, highlighting the need for new vaccine approaches.
  • - Research using adenoviral vectors has shown that an intranasal vaccine, especially one based on chimpanzee adenoviruses, produces stronger immunity compared to traditional intramuscular shots.
  • - This intranasal method effectively triggers broad immune responses and offers protection against both the original virus and new variants, suggesting it could be a promising strategy for future COVID-19 vaccines.
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  • - Recent studies show that memory cells play a vital role in sustaining food allergies, making them potential targets for new treatments.
  • - IgG memory B cells can replenish IgE-secreting cells after exposure to allergens, although these IgE cells have short lifespans.
  • - Advances in identifying specific B and T cell populations, like Th2A and Tfh13, enhance our understanding of immune responses in food allergies, but more research is needed to clarify their roles in IgE memory responses.
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  • Cigarette smoke exposure decreases the ability of the upper respiratory tract to produce protective antibodies, specifically IgA, which are crucial for immune defense.
  • Evidence from a murine model indicates that this exposure reduces the number of antibody-secreting cells and their effectiveness in responding to antigens.
  • Mechanistically, cigarette smoke impairs processes necessary for antibody production and transport in the nasal mucosa, highlighting its immunosuppressive effects.
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While type 2 immunity has been conventionally viewed as beneficial against helminths, venoms, and poisons, and harmful in allergy, contemporary research has uncovered its critical role in the maintenance of homeostasis. The initiation of a type 2 immune response involves an intricate crosstalk between structural and immune cells. Structural cells react to physical and chemical tissue perturbations by secreting alarmins, which signal the innate immune system to restore homeostasis.

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  • IgE production against harmless foods can lead to dangerous allergic reactions like anaphylaxis, with IgG memory B cells playing a key role in maintaining IgE immunity.
  • The research aimed to uncover what is necessary for the IgE recall response specifically in peanut allergies, utilizing human PBMC cultures and a mouse allergy model.
  • Results showed that blocking IL-4/IL-13 signaling stopped IgE production and altered immune responses, while anti-IL-4Rα treatment in mice provided lasting protection against allergic reactions and anaphylaxis.
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Eosinophils have emerged as multifaceted cells that contribute to tissue homeostasis. However, the impact of the microbiota on their frequency and function at mucosal sites remains unclear. Here, we investigated the role of the microbiota in the regulation of enteric eosinophils.

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Background: A number of food allergies (eg, fish, shellfish, and nuts) are lifelong, without any disease-transforming therapies, and unclear in their underlying immunology. Clinical manifestations of food allergy are largely mediated by IgE. Although persistent IgE titers have been attributed conventionally to long-lived IgE plasma cells (PCs), this has not been directly and comprehensively tested.

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Students measure out their lives, not with coffee spoons, but with grades on examinations. But what exams mean and whether or not they are a bane or a boon is moot. Senior undergraduates (A.

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