Publications by authors named "Josephine Giles"

CD8 T cell exhaustion hampers control of cancer and chronic infections and limits chimeric antigen receptor (CAR) T cell efficacy. Targeting in CAR T cells provides therapeutic benefit; however, TET2's role in exhausted T cell (T) development is unclear. In chronic lymphocytic choriomeningitis virus (LCMV) infection, TET2 drove conversion from stem cell-like T progenitors toward terminally differentiated and effector (T)-like T.

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Combination checkpoint blockade with anti-PD-1 and anti-CTLA-4 antibodies has shown promising efficacy in melanoma. However, the underlying mechanism in humans remains unclear. Here, we perform paired single-cell RNA and T cell receptor (TCR) sequencing across time in 36 patients with stage IV melanoma treated with anti-PD-1, anti-CTLA-4, or combination therapy.

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Article Synopsis
  • Exhausted CD8 T cells in chronic viral infections and cancer express inhibitory receptors (IRs) like PD-1, which can be blocked to reinvigorate T cell function.
  • Co-targeting multiple IRs, such as PD-1 and LAG-3, can enhance T cell response and disease control beyond blocking PD-1 alone.
  • The study reveals distinct functions of PD-1 and LAG-3 in T cell activity, showing LAG-3's role in T cell durability and in creating a subset of T cells that are more effective at killing cancer or infected cells.
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Persistent inflammation driven by cytokines such as type-one interferon (IFN-I) can cause immunosuppression. We show that administration of the Janus kinase 1 (JAK1) inhibitor itacitinib after anti-PD-1 (programmed cell death protein 1) immunotherapy improves immune function and antitumor responses in mice and results in high response rates (67%) in a phase 2 clinical trial for metastatic non-small cell lung cancer. Patients who failed to respond to initial anti-PD-1 immunotherapy but responded after addition of itacitinib had multiple features of poor immune function to anti-PD-1 alone that improved after JAK inhibition.

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Rewiring exhausted CD8 T (Tex) cells toward functional states remains a therapeutic challenge. Tex cells are epigenetically programmed by the transcription factor Tox. However, epigenetic remodeling occurs as Tex cells transition from progenitor (Tex) to intermediate (Tex) and terminal (Tex) subsets, suggesting development flexibility.

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Article Synopsis
  • * Results indicate that as people age, T cell subsets shift toward a more activated state, and naive CD4 T cells undergo significant genetic changes despite previously being thought resilient to aging.
  • * A new subtype of CD8αα T cells, which is lost with age and is important for quick immune responses, was identified, highlighting the complex molecular changes in T cells that may influence how the immune system functions differently
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CD8 T cells are end effectors of cancer immunity. Most forms of effective cancer immunotherapy involve CD8 T cell effector function. Here, we review the current understanding of T cell function in cancer, focusing on key CD8 T cell subtypes and states.

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Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) infection of vaccinated individuals is increasingly common but rarely results in severe disease, likely due to the enhanced potency and accelerated kinetics of memory immune responses. However, there have been few opportunities to rigorously study early recall responses during human viral infection. To better understand human immune memory and identify potential mediators of lasting vaccine efficacy, we used high-dimensional flow cytometry and SARS-CoV-2 antigen probes to examine immune responses in longitudinal samples from vaccinated individuals infected during the Omicron wave.

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Identifying molecular mechanisms of exhausted CD8 T cells (T) is a key goal of improving immunotherapy of cancer and other diseases. However, high-throughput interrogation of in vivo T can be costly and inefficient. In vitro models of T are easily customizable and quickly generate high cellular yield, enabling CRISPR screening and other high-throughput assays.

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CD8 T cell exhaustion (T) impairs the ability of T cells to clear chronic infection or cancer. While T are hypofunctional, some T retain effector gene signatures, a feature associated with killer lectin-like receptor (KLR) expression. Although KLR T (T) may improve control of chronic antigen, the signaling molecules regulating this population are poorly understood.

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CD8 T cell exhaustion (Tex) limits disease control during chronic viral infections and cancer. Here, we investigated the epigenetic factors mediating major chromatin-remodeling events in Tex-cell development. A protein-domain-focused in vivo CRISPR screen identified distinct functions for two versions of the SWI/SNF chromatin-remodeling complex in Tex-cell differentiation.

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Identifying novel molecular mechanisms of exhausted CD8 T cells (T ) is a key goal of improving immunotherapy of cancer and other diseases. However, high-throughput interrogation of T can be costly and inefficient. models of T are easily customizable and quickly generate high cellular yield, offering an opportunity to perform CRISPR screening and other high-throughput assays.

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T cell exhaustion (T ) impairs the ability of T cells to clear chronic infection or cancer. While exhausted T cells are hypofunctional, some exhausted T cells retain effector gene signatures, a feature that is associated with expression of KLRs (killer lectin-like receptors). Although KLR T cells may improve control of chronic antigen, the signaling molecules regulating this population are poorly understood.

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SARS-CoV-2 infection of vaccinated individuals is increasingly common but rarely results in severe disease, likely due to the enhanced potency and accelerated kinetics of memory immune responses. However, there have been few opportunities to rigorously study early recall responses during human viral infection. To better understand human immune memory and identify potential mediators of lasting vaccine efficacy, we used high-dimensional flow cytometry and SARS-CoV-2 antigen probes to examine immune responses in longitudinal samples from vaccinated individuals infected during the Omicron wave.

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Chronic antigen exposure during viral infection or cancer promotes an exhausted T cell (Tex) state with reduced effector function. However, whether all antigen-specific T cell clones follow the same Tex differentiation trajectory remains unclear. Here, we generate a single-cell multiomic atlas of T cell exhaustion in murine chronic viral infection that redefines Tex phenotypic diversity, including two late-stage Tex subsets with either a terminal exhaustion (Tex) or a killer cell lectin-like receptor-expressing cytotoxic (Tex) phenotype.

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Article Synopsis
  • Naïve CD8 T cells can develop into three main types: effector, memory, and exhausted T cells, each with unique functional abilities and potential for therapy.
  • The study employed advanced techniques like single-cell RNA sequencing to investigate these different T cell populations during acute and chronic infections, revealing new subtypes and their developmental processes.
  • Findings highlighted the role of critical factors like Zeb2 and Btg1 in T cell differentiation and indicated that diverse T cell subsets can utilize similar biological mechanisms despite having different genetic makeups due to varying infections.
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We examined antibody and memory B cell responses longitudinally for ∼9-10 months after primary 2-dose SARS-CoV-2 mRNA vaccination and 3 months after a 3rd dose. Antibody decay stabilized between 6 and 9 months, and antibody quality continued to improve for at least 9 months after 2-dose vaccination. Spike- and RBD-specific memory B cells remained durable over time, and 40%-50% of RBD-specific memory B cells simultaneously bound the Alpha, Beta, Delta, and Omicron variants.

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Patients with COVID-19 present with a wide variety of clinical manifestations. Thromboembolic events constitute a significant cause of morbidity and mortality in patients infected with SARS-CoV-2. Severe COVID-19 has been associated with hyperinflammation and pre-existing cardiovascular disease.

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Article Synopsis
  • The research created a comprehensive record of T cell differentiation in healthy humans, including insights into exhausted CD8 T cells, focusing on gene expression and chromatin accessibility.
  • The findings were applied to various clinical contexts, such as melanoma treatment and autoimmune diseases, enhancing understanding of disease-specific biological processes.
  • The study also predicted important genetic regulatory elements and validated their significance through experiments, demonstrating how this approach can help identify targets for cellular engineering.
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  • The study investigates how mRNA vaccines influence antibody and memory B cell responses over time after the initial two doses and a subsequent third dose.
  • Findings show that antibody levels stabilize around 6-9 months after the second dose, while their quality continues to improve, and memory B cells remain stable and effective against multiple variants.
  • The research indicates that pre-3rd dose memory B cell levels can enhance antibody levels after vaccination, but high existing antibody levels may hinder further immune response enhancements from additional doses.
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Article Synopsis
  • - Multi-system Inflammatory Syndrome in Children (MIS-C) is a serious condition that can arise in kids after having a mild or asymptomatic COVID-19 infection, leading to severe inflammation and shock-like symptoms.
  • - Researchers analyzed over 1,400 proteins in the plasma of children with COVID-19 to understand the causes of hyperinflammation and vascular damage, finding common protein signatures with other inflammatory conditions.
  • - They identified PLA2G2A as a key marker associated with MIS-C and discovered that the immune response related to IFNγ is altered in these patients, which helps to explain the variation in clinical symptoms.
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