Publications by authors named "Josep Rizo"

The Ca sensor synaptotagmin-1 (Syt1) triggers neurotransmitter release together with the neuronal sensitive factor attachment protein receptor (SNARE) complex formed by syntaxin-1, SNAP25, and synaptobrevin. Moreover, Syt1 increases synaptic vesicle (SV) priming and impairs spontaneous vesicle release. The Syt1 CB domain binds to the SNARE complex through a primary interface via two regions (I and II), but how exactly this interface mediates distinct functions of Syt1 and the mechanism underlying Ca triggering of release are unknown.

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The Ca sensor synaptotagmin-1 triggers neurotransmitter release together with the neuronal SNARE complex formed by syntaxin-1, SNAP25 and synaptobrevin. Moreover, synaptotagmin-1 increases synaptic vesicle priming and impairs spontaneous vesicle release. The synaptotagmin-1 CB domain binds to the SNARE complex through a primary interface via two regions (I and II), but how exactly this interface mediates distinct functions of synaptotagmin-1, and the mechanism underlying Ca-triggering of release is unknown.

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Article Synopsis
  • Neurotransmitter release happens quickly through the interaction of calcium (Ca) with Synaptotagmin-1 and the formation of SNARE complexes, but how these interactions lead to membrane fusion is still unclear.
  • Synaptotagmin-1's Ca-binding loops were thought to help merge membranes, but new simulations show they might actually hinder SNARE function, contradicting older models.
  • Recent experiments suggest that when Ca binds to Synaptotagmin-1, it reorients the protein in a way that aids in bringing SNARE complexes together for membrane fusion, acting like a lever to enhance the process.
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  • SNARE proteins (syntaxin-1, SNAP-25, synaptobrevin) play a crucial role in rapidly releasing neurotransmitters by forming complexes that fuse synaptic vesicles with cell membranes within microseconds.* -
  • Current theories suggest that these proteins work mechanically like rods, zipping together to bring membranes closer, but the exact mechanism of fast fusion is still unclear.* -
  • Molecular dynamics simulations propose a new model where the zippering of SNARE helices initiates fusion at a local level, expanding hydrophobic regions to form fusion pores, and indicates that polyunsaturated lipids might enhance the efficiency of this process.*
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  • Regulation of neurotransmitter release is crucial for different types of information processing in the brain, with Munc13 proteins being key players in this process.
  • Munc13-1 has specific domains, including a calmodulin binding (CaMb) domain for short-term plasticity and a CA domain that dimerizes and interacts with other proteins influencing presynaptic activity.
  • Research indicates that the Munc13-1's activity is inhibited by interactions between its domains but can be enhanced by other proteins like RIM2α and calmodulin, highlighting a complex mechanism of regulating neurotransmitter release.
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Regulation of neurotransmitter release during presynaptic plasticity underlies varied forms of information processing in the brain. Munc13s play essential roles in release via their conserved C-terminal region, which contains a MUN domain involved SNARE complex assembly, and control multiple presynaptic plasticity processes. Munc13s also have a variable N-terminal region, which in Munc13-1 includes a calmodulin binding (CaMb) domain involved in short-term plasticity and a CA domain that forms an inhibitory homodimer.

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  • - The study focuses on the tau protein, which is linked to neurodegenerative diseases due to its role in amyloid formation, particularly highlighting mutations that affect its aggregation and microtubule-binding abilities.
  • - Researchers used a multi-disciplinary approach to design tau sequences that stabilize its structure and discovered that specific substitutions can reduce tau aggregation while maintaining its function.
  • - The findings suggest a mechanism that could help prevent the formation of harmful tau aggregates without compromising its biological roles, providing potential therapeutic strategies for treating neurodegenerative diseases.
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  • - The protein tau is linked to neurodegenerative diseases due to its role in amyloid formation, with mutations related to frontotemporal dementia increasing tau aggregation and disrupting its ability to bind microtubules.
  • - A combination of methods like computational modeling and mass spectrometry was used to design tau sequences that prevent aggregation while retaining their biological function, focusing on modifications near the 'PGGG' beta-turn motif.
  • - The study suggests that by stabilizing tau's structure, specifically through designed sequences, it's possible to reduce the harmful aggregation that leads to diseases without losing tau's important roles in the cell, providing potential strategies for therapies against protein misfolding disorders.
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Josep Rizo is a Professor of Biophysics, Biochemistry and Pharmacology at the University of Texas Southwestern Medical Center, where he is Virginia Lazenby O'Hara Chair in Biochemistry. He is particularly interested in the study of the mechanisms of neurotransmitter release and intracellular membrane fusion using structural biology, a variety of biophysical techniques and reconstitution approaches. Jose has been a part of the FEBS Open Bio Editorial Board since 2021.

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  • α-Synuclein (aSyn) aggregation is linked to neurodegenerative diseases and acts similarly to prions, but the details of how this seeding occurs are not fully understood.
  • Researchers created a new assay to study aSyn aggregation and conducted mutations to uncover factors that either promote or inhibit this process.
  • They discovered key regions responsible for aSyn aggregation and developed a modified aSyn fragment that dramatically improves seeding activity, which could aid in diagnosing synucleinopathies by analyzing protein structure.
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Stimulation of autophagy could provide powerful therapies for multiple diseases, including cancer and neurodegeneration. An attractive drug target for this purpose is Bcl-2, which inhibits autophagy by binding to the Beclin 1 BH3-domain. However, compounds that preclude Beclin 1/Bcl-2 binding might also induce apoptosis, which is inhibited by binding of Bcl-2 to BH3-domains of pro-apoptosis factors such as Bax.

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  • TDP-43's low-complexity domain can switch between two structures, α-helical and β-strand, which affects its ability to self-associate and form protein droplets.
  • When exposed to hydrogen peroxide, the β-strand structure disassembles due to oxidation, transforming into an α-helical formation that can interact with lipids.
  • The study highlights the significance of oxidative stress in regulating protein behavior, potentially impacting translation processes in vertebrate cells, and emphasizes the role of backbone interactions in protein self-association.
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  • - The study explores how the TDP-43 protein can switch between two structural forms—α-helical and β-strand—within a specific part of its low complexity domain, impacting its ability to self-associate and form protein droplets.
  • - When TDP-43 is exposed to hydrogen peroxide, it oxidizes key methionine residues, disrupting the β-strand structure and leading to a loss of self-association and phase separation, while facilitating the formation of the α-helical structure.
  • - The researchers suggest that this oxidative switch is crucial for controlling localized translation in vertebrate cells and highlight the importance of chemical interactions that affect the self-association of proteins with low sequence complexity.
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SNARE and Sec/Munc18 proteins are essential in synaptic vesicle exocytosis. Open form t-SNARE syntaxin and UNC-18 P334A are well-studied exocytosis-enhancing mutants. Here we investigate the interrelationship between the two mutations by generating double mutants in various genetic backgrounds in .

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  • Previous studies confirmed that WNK kinases 1 and 3 function as osmosensors and play a role in regulating cell volume.
  • Hydrostatic pressure affects WNK kinases by inducing phosphorylation in cell cultures and specific tubules, enhancing their activity and altering their structure.
  • Investigations using various techniques (like SEC-MALS and NMR) show that hydrostatic pressure changes the configuration of WNK3 from a dimer to a monomer, suggesting a complex relationship between pressure and osmosensing.
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As a prelude to fusion, the R-SNARE on one membrane zippers with Qa-, Qb-, and Qc-SNAREs from its apposed fusion partner, forming a four-helical bundle that draws the two membranes together. Because Qa- and Qb-SNAREs are anchored to the same membrane and are adjacent in the 4-SNARE bundle, their two anchors might be redundant. Using the recombinant pure protein catalysts of yeast vacuole fusion, we now report that the specific distribution of transmembrane (TM) anchors on the Q-SNAREs is critical for efficient fusion.

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Characterizing interactions of Synaptotagmin-1 with the SNARE complex is crucial to understand the mechanism of neurotransmitter release. X-ray crystallography revealed how the Synaptotagmin-1 C B domain binds to the SNARE complex through a so-called primary interface and to a complexin-1-SNARE complex through a so-called tripartite interface. Mutagenesis and electrophysiology supported the functional relevance of both interfaces, and extensive additional data validated the primary interface.

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Autophagy plays essential roles in a wide variety of physiological processes, such as cellular homeostasis, metabolism, development, differentiation, and immunity. Selective pharmacological modulation of autophagy is considered a valuable potential therapeutic approach to treat diverse human diseases. However, development of such therapies has been greatly impeded by the lack of specific small molecule autophagy modulators.

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  • * Synaptotagmin-1 senses calcium and works with the SNAREs to trigger neurotransmitter exocytosis, but studying this process is challenging due to the dynamic nature and complicated interactions of the proteins involved.
  • * Structural biology has greatly advanced our understanding of these mechanisms, highlighting the significance of weak protein interactions and the need to critically assess experimental techniques while recognizing that reinterpretations can lead to new insights in the field.
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Munc18-1 forms a template to organize assembly of the neuronal SNARE complex that triggers neurotransmitter release, binding first to a closed conformation of syntaxin-1 where its amino-terminal region interacts with the SNARE motif, and later binding to synaptobrevin. However, the mechanism of SNARE complex assembly remains unclear. Here, we report two cryo-EM structures of Munc18-1 bound to cross-linked syntaxin-1 and synaptobrevin.

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  • * The exact processes leading to membrane fusion are still not fully understood, partly due to the challenges of studying these dynamic interactions experimentally.
  • * Molecular dynamics simulations indicate that while SNARE proteins promote initial membrane contact, the primed state—featuring Synaptotagmin-1 and complexin-1—prevents premature fusion while remaining primed for quick release when calcium levels rise.
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Major recent advances and previous data have led to a plausible model of how key proteins mediate neurotransmitter release. In this model, the soluble -ethylmaleimide-sensitive factor (NSF) attachment protein (SNAP) receptor (SNARE) proteins syntaxin-1, SNAP-25, and synaptobrevin form tight complexes that bring the membranes together and are crucial for membrane fusion. NSF and SNAPs disassemble SNARE complexes and ensure that fusion occurs through an exquisitely regulated pathway that starts with Munc18-1 bound to a closed conformation of syntaxin-1.

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  • The androgen receptor (AR) is crucial in prostate cancer, where it adapts to function without androgens in castration-resistant prostate cancer (CRPC), influenced by epigenetic changes and interactions with histone lysine demethylases (KDMs).
  • Longer polyglutamine (polyQ) sequences in the AR-NTD may reduce transcription activity and have protective effects against prostate cancer, though they can also lead to muscular atrophy, with the exact mechanisms still unclear.
  • Research using NMR spectroscopy reveals weak interactions between AR and KDM4A and shows that longer polyQ sequences can enhance liquid-liquid phase separation of AR, suggesting a potential pathway for reducing AR's activity and paving the way for new
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  • * Specific point mutations (K603E and R769E) in the polybasic face of the CCB region significantly hinder liposome bridging and priming of synaptic vesicles, indicating their key role in vesicle release.
  • * The study underscores that two separate orientations of the C-CB region affect neurotransmitter release and presynaptic plasticity, with a dominant impact from the K603E and R769E mutations.
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Protein-protein interactions play critical roles in biology, but the structures of many eukaryotic protein complexes are unknown, and there are likely many interactions not yet identified. We take advantage of advances in proteome-wide amino acid coevolution analysis and deep-learning–based structure modeling to systematically identify and build accurate models of core eukaryotic protein complexes within the proteome. We use a combination of RoseTTAFold and AlphaFold to screen through paired multiple sequence alignments for 8.

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