Quantum Simulations and Experimental Insights into Glyphosate Adsorption Using Graphene-Based Nanomaterials.

The increasing global demand for food and agrarian development brings to light a dual issue concerning the use of substances that are crucial for increasing productivity yet can be harmful to human health and the environment when misused. Herein, we combine insights from high-level quantum simulations and experimental findings to elucidate the fundamental physicochemical mechanisms behind developing graphene-based nanomaterials for the adsorption of emerging contaminants, with a specific focus on pesticide glyphosate (GLY). We conducted a comprehensive theoretical and experimental investigation of graphene-based supports as promising candidates for detecting, sensing, capturing, and removing GLY applications.

Core-softened colloid under extreme geometrical confinement.

Geometrical constraints offer a promising strategy for assembling colloidal crystal structures that are not typically observed in bulk or under 2D conditions. Core-softened colloids, in particular, have emerged as versatile chemical building blocks with applications across various scientific and technological areas. In this study, we investigate the behavior of a core-softened model confined between two parallel walls.

TrajPy: empowering feature engineering for trajectory analysis across domains.

Motivation: Trajectories, which are sequentially measured quantities that form a path, are an important presence in many different fields, from hadronic beams in physics to electrocardiograms in medicine. Trajectory analysis requires the quantification and classification of curves, either by using statistical descriptors or physics-based features. To date, no extensive and user-friendly package for trajectory analysis has been readily available, despite its importance and potential application across various domains.

The ECM and tissue architecture are major determinants of early invasion mediated by E-cadherin dysfunction.

Germline mutations of E-cadherin cause Hereditary Diffuse Gastric Cancer (HDGC), a highly invasive cancer syndrome characterised by the occurrence of diffuse-type gastric carcinoma and lobular breast cancer. In this disease, E-cadherin-defective cells are detected invading the adjacent stroma since very early stages. Although E-cadherin loss is well established as a triggering event, other determinants of the invasive process persist largely unknown.

A DPD model of soft spheres with waterlike anomalies and poly(a)morphism.

Core-softened approaches have been employed to understand the behavior of a large variety of systems in soft condensed matter, from biological molecules to colloidal crystals, glassy phases, and water-like anomalies. At the same time, dissipative particle dynamics (DPD) is a powerful tool suitable for studying larger length and time scales. In this sense, we propose a simple model of soft molecules that exhibits a wide range of interesting phenomena: polyamorphism, with three amorphous phases, polymorphysm, including a recently found gyroid phase and a cubic diamond structure, reentrant liquid phase, and density, diffusion, and structural water-like anomalies.

Solid-amorphous transition is related to the waterlike anomalies in a fluid without liquid-liquid phase transition.

The most accepted origin for the water anomalous behavior is the phase transition between two liquids (LLPT) in the supercooled regime connected to the glassy first order phase transition at lower temperatures. Two length scale potentials are an effective approach that has long been employed to understand the properties of fluids with waterlike anomalies and, more recently, the behavior of colloids and nanoparticles. These potentials can be parameterized to have distinct shapes, as a pure repulsive ramp, such as the model proposed by de Oliveira et al.

Phase classification using neural networks: application to supercooled, polymorphic core-softened mixtures.

Characterization of phases of soft matter systems is a challenge faced in many physical chemical problems. For polymorphic fluids it is an even greater challenge. Specifically, glass forming fluids, as water, can have, besides solid polymorphism, more than one liquid and glassy phases, and even a liquid-liquid critical point.

Core-softened water-alcohol mixtures: the solute-size effects.

Water is the most anomalous material on Earth, with a long list of thermodynamic, dynamic and structural behaviors that deviate from what is expected. Recent studies have indicated that these anomalies may be related to a competition between two liquids, which means that water has a potential liquid-liquid phase transition (LLPT) that ends at a liquid-liquid critical point (LLCP). In a recent study [J.

Correction: Salt parameterization can drastically affect the results from classical atomistic simulations of water desalination by MoS nanopores.

Correction for 'Salt parameterization can drastically affect the results from classical atomistic simulations of water desalination by MoS2 nanopores' by João P. K. Abal et al.

Tracer diffusion in crowded solutions of sticky polymers.

Macromolecular diffusion in strongly confined geometries and crowded environments is still to a large extent an open subject in soft matter physics and biology. In this paper, we employ large-scale Langevin dynamics simulations to investigate how the diffusion of a tracer is influenced by the combined action of excluded-volume and weak attractive crowder-tracer interactions. We consider two species of tracers, standard hard-core particles described by the Weeks-Chandler-Andersen (WCA) repulsive potential and core-softened (CS) particles, which model, e.

Adhesion modulates cell morphology and migration within dense fibrous networks.

One of the most fundamental abilities required for the sustainability of complex life forms is active cell migration, since it is essential in diverse processes from morphogenesis to leukocyte chemotaxis in immune response. The movement of a cell is the result of intricate mechanisms, that involve the coordination between mechanical forces, biochemical regulatory pathways and environmental cues. In particular, epithelial cancer cells have to employ mechanical strategies in order to migrate through the tissue's basement membrane and infiltrate the bloodstream during the invasion stage of metastasis.

Salt parameterization can drastically affect the results from classical atomistic simulations of water desalination by MoS nanopores.

Water scarcity is a reality in our world, and scenarios predicted by leading scientists in this area indicate that it will worsen in the next decades. However, new technologies based on low-cost seawater desalination can prevent the worst scenarios, providing fresh water for humanity. With this goal, membranes based on nanoporous materials have been suggested in recent years.

2D nanoporous membrane for cation removal from water: Effects of ionic valence, membrane hydrophobicity, and pore size.

Using molecular dynamic simulations, we show that single-layers of molybdenum disulfide (MoS) and graphene can effectively reject ions and allow high water permeability. Solutions of water and three cations with different valencies (Na, Zn, and Fe) were investigated in the presence of the two types of membranes, and the results indicate a high dependence of the ion rejection on the cation charge. The associative characteristic of ferric chloride leads to a high rate of ion rejection by both nanopores, while the monovalent sodium chloride induces lower rejection rates.

Waterlike anomalies in a two-dimensional core-softened potential.

We investigate the structural, thermodynamic, and dynamic behavior of a two-dimensional (2D) core-corona system using Langevin dynamics simulations. The particles are modeled by employing a core-softened potential which exhibits waterlike anomalies in three dimensions. In previous studies in a quasi-2D system a new region in the pressure versus temperature phase diagram of structural anomalies was observed.

Breakdown of the Stokes-Einstein water transport through narrow hydrophobic nanotubes.

In this paper the transport properties of water confined inside hydrophobic and hydrophilic nanotubes are compared for different nanotube radii and densities. While for wider nanotubes the nature of the wall plays no relevant role in the water mobility, for small nanotubes the hydrophobic confinement presents a peculiar behavior. As the density is increased the viscosity shows a huge increase associated with a small increase in the diffusion coefficient.

How Competitive Interactions Affect the Self-Assembly of Confined Janus Dumbbells.

We explore the self-assembled morphologies of Janus nanoparticles under cylindrical confinement. Langevin dynamics simulations are employed to study the behavior of two types of dimers inside cylinders with distinct radius. The first type of nanoparticle was modeled using one monomer that interacts by a standard Lennard-Jones potential and another monomer that is modeled using a purely repulsive two length scale shoulder potential.

Anomalous diffusion and diffusion anomaly in confined Janus dumbbells.

Self-assembly and dynamical properties of Janus nanoparticles have been studied by molecular dynamic simulations. The nanoparticles are modeled as dimers and they are confined between two flat parallel plates to simulate a thin film. One monomer from the dumbbells interacts by a standard Lennard-Jones potential and the other by a two-length scales shoulder potential, typically used for anomalous fluids.

Confinement effects on the properties of Janus dimers.

Confinement has been suggested as a tool to tune the self-assembly properties of nanoparticles, surfactants, polymers and colloids. In this way, we explore the phase diagram of Janus nanoparticles confined between two parallel walls using molecular dynamics simulations. A nanoparticle was modeled as a dimer made by one monomer that interacts via a standard Lennard Jones potential and another monomer that is modeled using a two-length scale shoulder potential.

Self-Assembly and Water-like Anomalies in Janus Nanoparticles.

We explore the pressure versus temperature phase diagram of a system of dimeric Janus nanoparticles using molecular dynamics simulations. Each nanoparticle is modeled as a dumbbell which has one monomer that interacts by a standard Lennard-Jones potential while the other monomer interacts by a core-softened potential. The systems composed by particles interacting only by core-softened potential exhibit the density and the diffusion anomalous behavior observed in water while if the particles interact only by the Lennard-Jones potential no anomaly is present.

Effects of confinement on anomalies and phase transitions of core-softened fluids.

We use molecular dynamics simulations to study how the confinement affects the dynamic, thermodynamic, and structural properties of a confined anomalous fluid. The fluid is modeled using an effective pair potential derived from the ST4 atomistic model for water. This system exhibits density, structural, and dynamical anomalies, and the vapor-liquid and liquid-liquid critical points similar to the quantities observed in bulk water.

New structural anomaly induced by nanoconfinement.

We explore the structural properties of anomalous fluids confined in a nanopore using molecular dynamics simulations. The fluid is modeled by core-softened (CS) potentials that have a repulsive shoulder and an attractive well at a further distance. Changing the attractive well depth of the fluid-fluid interaction potential, we studied the behavior of the anomalies in the translational order parameter t and excess entropy s(2) for the particles near to the nanopore wall (contact layer) for systems with two or three layers of particles.

High pressure induced phase transition and superdiffusion in anomalous fluid confined in flexible nanopores.

The behavior of a confined spherical symmetric anomalous fluid under high external pressure was studied with Molecular Dynamics simulations. The fluid is modeled by a core-softened potential with two characteristic length scales, which in bulk reproduces the dynamical, thermodynamical, and structural anomalous behavior observed for water and other anomalous fluids. Our findings show that this system has a superdiffusion regime for sufficient high pressure and low temperature.

Enhanced flow of core-softened fluids through narrow nanotubes.

We investigate through non-equilibrium molecular dynamic simulations the flow of anomalous fluids inside rigid nanotubes. Our results reveal an anomalous increase of the overall mass flux for nanotubes with sufficiently smaller radii. This is explained in terms of a transition from a single-file type of flow to the movement of an ordered-like fluid as the nanotube radius increases.

Distinct dynamical and structural properties of a core-softened fluid when confined between fluctuating and fixed walls.

Molecular dynamics simulations were used to study the structural and dynamical properties of a water-like core-softened fluid under confinement when the confining media is rigid or fluctuating. The fluid is modeled using a two-length scale potential that reproduces, in the bulk, the anomalous behavior observed in water. We perform simulations in the NVT ensemble for fixed flat walls and in the NpT ensemble using a fluctuating wall control of pressure to study how the fluid behavior is affected by fixed and non-fixed walls.

Relation between flow enhancement factor and structure for core-softened fluids inside nanotubes.

The relationship between enhancement flow and structure of core-softened fluids confined inside nanotubes has been studied using nonequilibrium molecular dynamics simulation. The fluid was modeled with different types of attractive and purely repulsive two length scale potentials. Such potentials reproduce in bulk the anomalous behavior observed for liquid water.