Publications by authors named "Jose Jaimes"

Rotavirus is a leading cause of diarrhea among children but less known as a cause among adults. We describe clinical, epidemiologic, and genotype characteristics of a rotavirus outbreak among adults in King County, Washington occurring January-June 2023. Adult rotavirus incidence in 2023 was ten times higher than the same period in 2022 (5% versus 0.

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Article Synopsis
  • Rotavirus group A (RVA) is a leading cause of serious diarrhea in children worldwide, but vaccination programs have significantly reduced hospitalizations and deaths related to it.
  • From 2016 to 2021, a study in Nam Dinh and Thua Thien Hue provinces of Vietnam monitored RVA prevalence, revealing significant shifts in dominant strains.
  • The G9, G3, and G8 strains were the most common, with G3 prevalence notably decreasing, while G1 strains re-emerged, underscoring the complexity of genotype changes and the ongoing need to evaluate vaccine effectiveness.
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This study reports the coding-complete genome sequences of three rotavirus A (RVA) reference strains previously adapted in tissue culture: RVA/Mouse-tc/USA/EDIM/XXXX/G16P[16] with a G16-P[16]-I7-R7-C7-M8-A7-N7-T10-E7-H9 genotype constellation, RVA/Human-tc/USA/Ph158/1998/G9P[6] with a G9-P[6]-I2-R2-C2-M2-A2-N2-T2-E2-H2 genotype constellation, and RVA/Human-tc/USA/CC425/1998/G3P[9] with a G3-P[9]-I2-R2-C2-M2-A3-N2-T1-E2-H3 genotype constellation.

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In this study, we report the detection of a G6P[14] rotavirus strain from a human stool sample within the United States. The full genotype constellation of the G6P[14] strain was identified as G6-P[14]-I2-R2-C2-M2-A11-N2-T6-E2-H3.

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Rotavirus (RV) was a common healthcare-associated infection prior to the introduction of the RV vaccine. Following widespread RV vaccination, healthcare-associated rotavirus cases are rare. We describe an investigation of a cluster of rotavirus infections in a pediatric hospital in which an uncommon genotype not typically circulating in the United States was detected.

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Before the introduction of vaccines, group A rotaviruses (RVA) were the leading cause of acute gastroenteritis in children worldwide. The National Rotavirus Strain Surveillance System (NRSSS) was established in 1996 by the Centers for Disease Control and Prevention (CDC) to perform passive RVA surveillance in the USA. We report the distribution of RVA genotypes collected through NRSSS during the 2009-2016 RVA seasons and retrospectively examine the genotypes detected through the NRSSS since 1996.

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Species A rotaviruses (RVA) still play a major role in causing acute diarrhea in children under five years old worldwide. Currently, an 11-gene classification system is used to designate the full genotypic constellations of circulating strains. Viral proteins and non-structural proteins in the order VP7-VP4-VP6-VP1-VP2-VP3-NSP1-NSP2-NSP3-NSP4-NSP5/6 are represented by the genotypes Gx-P[x]-Ix-Rx-Cx-Mx-Ax-Nx-Tx-Ex-Hx, respectively.

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Article Synopsis
  • Rotavirus A (RVA) is a leading cause of gastroenteritis in young children, and this study focuses on a strain found in a 6-month-old child in the Central African Republic.
  • The research details the genetic sequencing of a specific RVA strain, revealing that most genes closely resemble those from genogroup 2 rotaviruses, indicating a strong genetic connection to other strains.
  • Notably, some genes show signs of genetic reassortment between human and animal RVA strains, suggesting interactions between these viruses across species.
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  • This study analyzed stool samples from 52 children (ages 7-16) to find metabolic and bacterial differences between those with normal weight and those who are overweight or obese.
  • Significant metabolites identified include arabinose, butyrate, galactose, and trimethylamine, which differed across the weight groups.
  • The study also found changes in specific bacteria, particularly genus Escherichia and Tyzzerella subgroup 3, linking these findings to the idea that gut bacteria contribute to energy absorption in obese children.
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Rwanda was the first low-income African country to introduce RotaTeq vaccine into its Expanded Programme on Immunization in May 2012. To gain insights into the overall genetic make-up and evolution of Rwandan G1P[8] strains pre- and post-vaccine introduction, rotavirus positive fecal samples collected between 2011 and 2016 from children under the age of 5 years as part of ongoing surveillance were genotyped with conventional RT-PCR based methods and whole genome sequenced using the Illumina MiSeq platform. From a pool of samples sequenced (n = 158), 36 were identified as G1P[8] strains (10 pre-vaccine and 26 post-vaccine), of which 35 exhibited a typical Wa-like genome constellation.

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Supervised learning problems can be faced by using a wide variety of approaches supported in machine learning. In recent years there has been an increasing interest in using the evolutionary computation paradigm as the classifier search method, helping the technique of applied machine learning. In this context, the knowledge representation in form of logical rules has been one of the most accepted machine learning approaches, because of its level of expressiveness.

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-resveratrol, a well-known plant phenolic compound, has been intensively investigated due to its association with the so-called French paradox. However, despite its high pharmacological potential, -resveratrol has shown relatively low bioavailability. -resveratrol is intensively metabolized in the intestine and liver, yielding metabolites that may be responsible for its high bioactivity.

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Flavonolignans occur typically in (milk thistle) fruit extract, silymarin, which contains silybin, isosilybin, silychristin, silydianin, and their 2,3-dehydroderivatives, together with other minor flavonoids and a polymeric phenolic fraction. Biotransformation of individual silymarin components by human microbiota was studied ex vivo, using batch incubations inoculated by fecal slurry. Samples at selected time points were analyzed by ultrahigh-performance liquid chromatography equipped with mass spectrometry.

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Stilbenoids are dietary phenolics with notable biological effects on humans. Epidemiological, clinical, and nutritional studies from recent years have confirmed the significant biological effects of stilbenoids, such as oxidative stress protection and the prevention of degenerative diseases, including cancer, cardiovascular diseases, and neurodegenerative diseases. Stilbenoids are intensively metabolically transformed by colon microbiota, and their corresponding metabolites might show different or stronger biological activity than their parent molecules.

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Dietary phenolics or polyphenols are mostly metabolized by the human gut microbiota. These metabolites appear to confer the beneficial health effects attributed to phenolics. Microbial composition affects the type of metabolites produced.

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TRPV4 (Transient Receptor Potential Vanilloid 4) channels are activated by a wide range of stimuli, including hypotonic stress, non-noxious heat and mechanical stress and some small molecule agonists (e.g. phorbol ester 4α-PDD).

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