Novel microsatellite markers suggest significant genetic isolation in the Eastern Pacific sponge Aplysina gerardogreeni.

Background: The Eastern Tropical Pacific (ETP) harbors a great diversity of Porifera. In particular, the Aplysina genus has acquired biotechnological and pharmacological importance. Nevertheless, the ecological aspects of their species and populations have been poorly studied.

Isolation and characterization of novel microsatellite loci for the Eastern Pacific marine sponge Mycale cecilia by Illumina MiSeq sequencing.

Background: Mycale cecilia is an abundant Eastern Tropical Pacific sponge living in a wide variety of habitats, including coral reefs where it may directly interact with corals. It is also known to possess secondary metabolites of pharmacological value. These aspects highlight the importance of having a better understanding of its biology, and genetic and population diversity.

Redescription of Lernaeenicus longiventris Wilson, 1917 (Copepoda: Pennellidae) Parasitic on the Pacific Crevalle Jack Caranx caninus (Carangidae) Through Morphological and Molecular Analyses.

Purpose: The present study deals with a redescription of the copepod Lernaeenicus longiventris Wilson, 1917 (Copepoda: Siphonostomatoida: Pennellidae) found on the Pacific crevalle jack Caranx caninus Günther, using morphological and molecular analyses.

Methods: Fish were collected off Mazatlán Port (23° 12' N, 106° 26' W), in the State of Sinaloa, Mexico (southeastern Gulf of California). The copepods were morphologically analyzed by light microscopy.

De novo transcriptome assembly for two color types of the marine sponge Mycale (Carmia) cecilia.

Despite the ecological importance and the potential pharmacological application of the sponge Mycale (Carmia) cecilia, it is uncertain whether the body-color variation, even in individuals coexisting in the same area, is due to intraspecific phenotypic plasticity or corresponds to taxonomic divergence. This uncertainty is relatively common in several Porifera groups, which lack the resolution of morphological diagnostic characters and slow-evolving mitochondrial genomes as occurs in early splitting lineages. We sequenced the RNA of six individuals with two different body-color (green-morphotype and red-morphotype) collected at the same time side by side.

The complete mitogenome of excavating sponge (Demospongiae, Tetractinellida, Thoosidae) from Northeastern Tropical Pacific.

The complete mitogenome of Carballo, Cruz-Barraza & Gómez, 2004 (Tetractinellida, Thoosidae) was sequenced. This is the first complete mitogenome of the suborden Thoosina and the third Tetractinellid so far. The mitochondrial genome of was assembled based on reads obtained with the Illumina HiSeq platform.

The complete mitogenome of the Eastern Pacific sponge (Demospongiae, Verongida, Aplysinidae).

We report the first mitochondrial genome of a Verongid sponge, from the Pacific Ocean. This has 19,620 bp and includes 14 protein-coding genes, 2 rRNAs genes, and 25 tRNAs genes. The gene arrangement was similar to the one found in two Caribbean mitogenomes previously reported.

Sponge diversity in Eastern Tropical Pacific coral reefs: an interoceanic comparison.

Sponges are an important component of coral reef communities. The present study is the first devoted exclusively to coral reef sponges from Eastern Tropical Pacific (ETP). Eighty-seven species were found, with assemblages dominated by very small cryptic patches and boring sponges such as Cliona vermifera; the most common species in ETP reefs.

Description and molecular phylogeny of Axinella nayaritensis n. sp. (Porifera: Axinellida) from East Pacific and remarks about the polyphyly of the genus Axinella.

Axinella nayaritensis n. sp. is a typical species of the genus Axinella in spiculation (oxeas and styles), skeletal arrangement (axial condensation from which radiate an extra-axial plumoreticulated skeleton), and external form (arborescent).

Integrative taxonomy reveals the first record and a new species for the previously monotypic genus (Tethyida: Tethyidae) in the Gulf of Mexico.

The first record of the previous monotypic genus Tethytimea and the description of a new species from cryptic habitats of Gulf of Mexico are presented. Tethytimea carmelita sp. nov.

Testing the genetic predictions of a biogeographical model in a dominant endemic Eastern Pacific coral (Porites panamensis) using a genetic seascape approach.

The coral fauna of the Eastern Tropical Pacific (ETP) is depauperate and peripheral; hence, it has drawn attention to the factors allowing its survival. Here, we use a genetic seascape approach and ecological niche modeling to unravel the environmental factors correlating with the genetic variation of Porites panamensis, a hermatypic coral endemic to the ETP. Specifically, we test if levels of diversity and connectivity are higher among abundant than among depauperate populations, as expected by a geographically relaxed version of the Abundant Center Hypothesis (rel-ACH).

Boring sponges, an increasing threat for coral reefs affected by bleaching events.

Coral bleaching is a stress response of corals induced by a variety of factors, but these events have become more frequent and intense in response to recent climate-change-related temperature anomalies. We tested the hypothesis that coral reefs affected by bleaching events are currently heavily infested by boring sponges, which are playing a significant role in the destruction of their physical structure. Seventeen reefs that cover the entire distributional range of corals along the Mexican Pacific coast were studied between 2005/2006, and later between 2009/2010.

Restriction of sponges to an atoll lagoon as a result of reduced environmental quality.

The lagoon at Palmyra Atoll in the central Pacific was subject to major military modifications during WWII and now the dominant fauna on the lagoon's hard substrate are sponges, not corals. In this study, we quantified the physical and biological factors explaining the variation in sponge distribution patterns across 11 sites to determine the potential for the sponges in the lagoon at Palmyra to invade the surrounding reef systems. Significant differences in sponge assemblages were found among all but three sites.

Integrative taxonomy and molecular phylogeny of genus Aplysina (Demospongiae: Verongida) from Mexican Pacific.

Integrative taxonomy provides a major approximation to species delimitation based on integration of different perspectives (e.g. morphology, biochemistry and DNA sequences).