Publications by authors named "Jonathan Rowe"

Understanding and optimizing adolescent-specific engagement with behavior change interventions will open doors for providers to promote healthy changes in an age group that is simultaneously difficult to engage and especially important to affect. For digital interventions, there is untapped potential in combining the vastness of process-level data with the analytical power of artificial intelligence (AI) to understand not only how adolescents engage but also how to improve upon interventions with the goal of increasing engagement and, ultimately, efficacy. Rooted in the example of the INSPIRE narrative-centered digital health behavior change intervention (DHBCI) for adolescent risky behaviors around alcohol use, we propose a framework for harnessing AI to accomplish 4 goals that are pertinent to health care providers and software developers alike: measurement of adolescent engagement, modeling of adolescent engagement, optimization of current interventions, and generation of novel interventions.

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We present an empirical study of a range of evolutionary algorithms applied to various noisy combinatorial optimisation problems. There are three sets of experiments. The first looks at several toy problems, such as OneMax and other linear problems.

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Background: Attention deficit hyperactivity disorder (ADHD) affects about 13% of adolescents and is associated with substance use-related morbidity and mortality. While evidence on effective interventions to reduce alcohol use among adolescents with ADHD is limited, parent-teen communication about alcohol use has been found to be protective. Other approaches, such as educational interventions, hold promise to reduce alcohol-related harms in adolescents with ADHD.

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Interactive narrative technologies for preventive health care offer significant potential for promoting health behavior change in adolescents. By improving adolescents' knowledge, personal efficacy, and self-regulatory skills these technologies hold great promise for realizing positive impacts on adolescent health. These potential benefits are enabled through story-centric learning experiences that provide opportunities for adolescents to practice strategies to reduce risky health behaviors in engaging game-based environments.

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  • Bioluminescence imaging and tomography (BLT) are techniques used to study biological activities in mice, but their accuracy is limited by unknown optical properties of the tissues involved.
  • A new optimization algorithm has been developed to simultaneously determine both the optical properties and the location of bioluminescent sources using surface measurements.
  • The algorithm can accurately locate bioluminescence sources within 1 mm, achieving results comparable or superior to existing methods that require prior knowledge of optical parameters, thus enhancing molecular imaging capabilities.
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  • Photonics based pre-clinical imaging, especially bioluminescent tomography (BLT), is used to study biological activity in small animals like mice by reconstructing 3D light distribution from surface measurements.
  • Traditional methods often rely on estimated optical parameters, which can result in inaccurate imaging and longer processing times.
  • The new algorithm developed in this study accurately localizes light distribution and simultaneously determines optical properties from the same measurements, achieving better localization (around 1.53 mm error) compared to previous methods without needing assumptions about optical properties.
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Recent advances in artificial intelligence (AI) are creating new opportunities for personalizing technology-based health interventions to adolescents. This article provides a computer science perspective on how emerging AI technologies-intelligent learning environments, interactive narrative generation, user modeling, and adaptive coaching-can be utilized to model adolescent learning and engagement and deliver personalized support in adaptive health technologies. Many of these technologies have emerged from human-centered applications of AI in education, training, and entertainment.

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Purpose: Accidents and unintentional injuries account for the greatest number of adolescent deaths, often involving use of alcohol and other substances. This article describes the iterative design and development of Interactive Narrative System for Patient-Individualized Reflective Exploration (INSPIRE), a narrative-centered behavior change environment for adolescents focused on reducing alcohol use. INSPIRE is designed to serve as an extension to clinical preventive care, engaging adolescents in a theoretically grounded intervention for health behavior change by leveraging 3D game engine and interactive narrative technologies.

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  • Photonics based imaging, particularly bioluminescence imaging, is a crucial, sensitive, and non-invasive technique used to study biological functions in pre-clinical research by detecting light sources within tissues.
  • The development of a compressive sensing (CS) based hyperspectral imaging system allows for quicker data acquisition while maintaining high spectral content, significantly reducing the time needed for imaging compared to traditional methods.
  • Results show that tomographic reconstructions of internal light sources can be achieved accurately with lower localization errors and in shorter time frames, demonstrating the system's potential for multi-wavelength biomarker applications.
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The complexity of biological models makes methods for their analysis and understanding highly desirable. Here, we demonstrate the orchestration of various novel coarse-graining methods by applying them to the mitotic spindle assembly checkpoint. We begin with a detailed fine-grained spatial model in which individual molecules are simulated moving and reacting in a three-dimensional space.

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Effective quality risk management is fundamental to ensuring the protection of human subjects and reliability of clinical trial results during the conduct of clinical trials. Quality risk management supports effective delivery of clinical development programs and ultimately delivery of treatments to patients. Thus, risk management is a core element of an effective quality management system (QMS) as described in the TransCelerate Clinical Quality Management System (CQMS) conceptual framework.

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  • The article explores three NP-hard combinatorial optimization problems: number partitioning, binary knapsack, and quadratic binary knapsack, through an analysis of their fitness landscape properties.
  • The study investigates how these properties change with various problem parameters and compares different landscape features induced by penalty functions and neighbourhood operators.
  • The authors identify a simple parameter that captures variations in landscape features across different problem distributions, suggesting its usefulness in selecting the appropriate neighbourhood operator for local search heuristics.
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  • Chemical organisation theory simplifies the analysis of chemical systems' long-term behavior and is expanded here with new techniques for quantitative analysis of chemical reaction networks using continuous-time Markov chains.
  • The study introduces methods to identify the structures (or organisations) within these networks and analyze the movement between them.
  • A coarse-grained Markov chain model is developed to approximate the original network's behavior, enabling predictions over time, with experiments showing improved predictive precision through selective refinement of the models.*
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In this exploratory, hypothesis-generating literature review, we evaluated potentially differential effects of eicosapentaenoic acid (EPA) and docosahexaenoic acid (DHA) on low-density lipoprotein cholesterol (LDL-C), high-density lipoprotein cholesterol (HDL-C), triglycerides (TG), and non-HDL-C in published studies of ω-3 fatty acid supplementation or prescription ω-3 fatty acid ethyl esters. Placebo-adjusted changes in mean lipid parameters were compared in randomized, controlled trials in subjects treated for ≥ 4 weeks with DHA or EPA. Of 22 studies identified, 6 compared DHA with EPA directly, 12 studied DHA alone (including 14 DHA-treated groups), and 4 examined EPA alone.

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A genetic algorithm is invariant with respect to a set of representations if it runs the same no matter which of the representations is used. We formalize this concept mathematically, showing that the representations generate a group that acts upon the search space. Invariant genetic operators are those that commute with this group action.

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Background: An important consideration in determining the ability of fortified food-aid commodities to meet the nutritional needs of beneficiaries is the manner in which commodities are utilized and prepared and the degree to which micronutrient losses occur during handling and cooking by the beneficiaries.

Objective: A field study was conducted in Uganda, Malawi, and Guatemala to obtain data on storage, preparation, and usage of fortified blended foods provided by the US Agency for International Development.

Methods: Interview and observational data on the use of corn-soy blend, cornmeal, soy-fortified cornmeal, soy-fortified bulgur, and fortified vegetable oil were collected from more than 100 households and two wet-feeding sites (where food is prepared and served by staff on-site) in 32 villages.

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We demonstrate how a single-celled organism could undertake associative learning. Although to date only one previous study has found experimental evidence for such learning, there is no reason in principle why it should not occur. We propose a gene regulatory network that is capable of associative learning between any pre-specified set of chemical signals, in a Hebbian manner, within a single cell.

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We propose conditions in which an autonomous agent could arise, and increase in complexity. It is assumed that on the primitive Earth there arose a recycling flow-reactor containing spontaneously formed oil droplets or lipid aggregates. These droplets grew at a basal rate by simple incorporation of lipid phase material, and divided by external agitation.

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We propose that chemical evolution can take place by natural selection if a geophysical process is capable of heterotrophic formation of liposomes that grow at some base rate, divide by external agitation, and are subject to stochastic chemical avalanches, in the absence of nucleotides or any monomers capable of modular heredity. We model this process using a simple hill-climbing algorithm, and an artificial chemistry that is unique in exhibiting conservation of mass and energy in an open thermodynamic system. Selection at the liposome level results in the stabilization of rarely occurring molecular autocatalysts that either catalyse or are consumed in reactions that confer liposome level fitness; typically they contribute in parallel to an increasingly conserved intermediary metabolism.

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  • Theoretical models for CCD camera signals in hyperspectral imaging were developed using Markov chains with absorbing states, which help explain how the detected signal relates to the actual reflectance of samples.
  • Validation of these models involved testing with reflectance standards and tissue phantoms to ensure accuracy.
  • The resulting models deliver reliable solutions specifically for samples that behave like near-Lambertian reflectors, enhancing the precision of hyperspectral imaging analysis.
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The frequency with which various elements of the search space of a given evolutionary algorithm are sampled is affected by the family of recombination (reproduction) operators. The original Geiringer theorem tells us the limiting frequency of occurrence of a given individual under repeated application of crossover alone for the classical genetic algorithm. Recently, Geiringer's theorem has been generalized to include the case of linear GP with homologous crossover (which can also be thought of as a variable length GA).

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We consider complex systems that are composed of many interacting elements, evolving under some dynamics. We are interested in characterizing the ways in which these elements may be grouped into higher-level, macroscopic states in a way that is compatible with those dynamics. Such groupings may then be thought of as naturally emergent properties of the system.

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Current opinion considers two main hypotheses for the evolutionary origin of uptake signal sequences in bacteria: one model regards the uptake signal sequence (USS) as the result of biased gene conversion, whereas the second model views the USS as a molecular tag that evolved as an adaptation. In this article, we present various computational models that implement specific versions of those hypotheses. Those models show that the two hypothesis are not necessarily as opposed to each other as may appear at first glance.

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  • The paper builds on previous work (Rowe et al., 2002) by expanding the theory of genetic algorithms to consider search spaces with arbitrary group actions.
  • It introduces structural crossover operators that maintain specific schemata within these groups and presents a generalized schema theorem.
  • The study also discusses the Fourier transform in relation to the matrix group of the search space, demonstrating that simultaneous diagonalization occurs only if the group is Abelian, along with findings on structural crossover and mutation in this context.
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