Publications by authors named "John R P Knight"

Ribosome quality control (RQC) resolves collided ribosomes, thus preventing their cytotoxic effects. The chemotherapeutic agent 5-Fluorouracil (5FU) is best known for its misincorporation into DNA and inhibition of thymidylate synthase. However, while a major determinant of 5FU's anticancer activity is its misincorporation into RNAs, the mechanisms by which cancer cells overcome the RNA-dependent 5FU toxicity remain ill-defined.

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  • About 50% of colorectal cancers have mutations in the KRAS proto-oncogene, making them challenging to treat.
  • Researchers found that activated KRAS protein changes how mRNA translation is regulated, leading to more protein synthesis and higher c-MYC expression.
  • Targeting the pathways influenced by KRAS activation shows promise for potential clinical applications in cancer treatment.
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Cell division, differentiation and function are largely dependent on accurate proteome composition and regulated gene expression. To control this, protein synthesis is an intricate process governed by upstream signalling pathways. Eukaryotic translation is a multistep process and can be separated into four distinct phases: initiation, elongation, termination and recycling of ribosomal subunits.

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  • * The study highlights that mutant KRAS increases glutamine consumption in cancer cells, which is crucial for their growth and proliferation, and identifies SLC7A5 as a key player in maintaining amino acid levels needed for this process.
  • * Targeting protein synthesis pathways, particularly by inhibiting mTORC1 and deleting SLC7A5, shows promise in slowing down the growth of Kras-mutant tumors, suggesting SLC7A5 could be a valuable therapeutic target for difficult-to-treat CRC cases.
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  • Research using mouse models and organoids shows that the KRAS G12D mutation alters translation processes, leading to increased c-MYC protein expression through the MNK/eIF4E pathway.
  • Targeting this pathway can make KRAS mutant cancers more responsive to rapamycin and is linked to poor patient survival, indicating a potential treatment strategy for a specific patient group.
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Regulation of protein synthesis makes a major contribution to post-transcriptional control pathways. During disease, or under stress, cells initiate processes to reprogramme protein synthesis and thus orchestrate the appropriate cellular response. Recent data show that the elongation stage of protein synthesis is a key regulatory node for translational control in health and disease.

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Tumours depend on altered rates of protein synthesis for growth and survival, which suggests that mechanisms controlling mRNA translation may be exploitable for therapy. Here, we show that loss of APC, which occurs almost universally in colorectal tumours, strongly enhances the dependence on the translation initiation factor eIF2B5. Depletion of eIF2B5 induces an integrated stress response and enhances translation of MYC via an internal ribosomal entry site.

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  • RNA polymerase III (Pol-III) is crucial for making tRNAs and small RNAs, and its deregulation is linked to cancer, but its in vivo role wasn't well understood.
  • Researchers manipulated the Brf1 transcription factor that helps Pol-III work, finding that knocking out Brf1 caused embryos to die, while mice with one functional copy were healthy.
  • Conditional deletion of Brf1 in certain organs led to cell death and disrupted tissue balance, but Brf1's variation did not influence cancer development, indicating Brf1 is vital for tissue health but doesn’t directly drive cancer in the pancreas or gut.
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Intratumoral hypoxia causes the formation of dysfunctional blood vessels, which contribute to tumor metastasis and reduce the efficacy of therapeutic treatments. Blood vessels are embedded in the tumor stroma of which cancer-associated fibroblasts (CAFs) constitute a prominent cellular component. We found that hypoxic human mammary CAFs promoted angiogenesis in CAF-endothelial cell cocultures in vitro.

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TAp73 is a transcription factor that plays key roles in brain development, aging, and cancer. At the cellular level, TAp73 is a critical homeostasis-maintaining factor, particularly following oxidative stress. Although major studies focused on TAp73 transcriptional activities have indicated a contribution of TAp73 to cellular metabolism, the mechanisms underlying its role in redox homeostasis have not been completely elucidated.

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Cooling and hypothermia are profoundly neuroprotective, mediated, at least in part, by the cold shock protein, RBM3. However, the neuroprotective effector proteins induced by RBM3 and the mechanisms by which mRNAs encoding cold shock proteins escape cooling-induced translational repression are unknown. Here, we show that cooling induces reprogramming of the translatome, including the upregulation of a new cold shock protein, RTN3, a reticulon protein implicated in synapse formation.

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  • The RNA exosome is crucial for RNA processing and degrading faulty RNAs in eukaryotic cells, but its regulation, especially under stress, is not well understood.
  • Recent findings show that lowering the temperature in mammalian cells affects the expression of EXOSC10, a key component of the RNA exosome, and increases the process of SUMOylation, where small proteins are added to EXOSC10.
  • The study indicates that SUMOylation of EXOSC10 decreases its abundance and is linked to defects in ribosomal RNA processing under cold stress, highlighting a new regulatory mechanism in RNA metabolism.
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We show that a common polymorphic variant in the ERCC5 5' untranslated region (UTR) generates an upstream ORF (uORF) that affects both the background expression of this protein and its ability to be synthesized following exposure to agents that cause bulky adduct DNA damage. Individuals that harbor uORF1 have a marked resistance to platinum-based agents, illustrated by the significantly reduced progression-free survival of pediatric ependymoma patients treated with such compounds. Importantly, inhibition of DNA-PKcs restores sensitivity to platinum-based compounds by preventing uORF1-dependent ERCC5 expression.

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Controlled whole-body cooling has been used since the 1950s to protect the brain from injury where cerebral blood flow is reduced. Therapeutic hypothermia has been used successfully during heart surgery, following cardiac arrest and with varied success in other instances of reduced blood flow to the brain. However, why reduced temperature is beneficial is largely unknown.

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  • The MCM2-7 complex is crucial for DNA replication in eukaryotic cells, acting as a DNA helicase.
  • Research shows that MCM2 undergoes significant changes in its location within the cell's nucleus as the cell transitions from late G1 to early S phase, briefly attaching to the nuclear-matrix.
  • The study identifies three distinct states of MCM2's association with chromatin and the nuclear-matrix, indicating that the functional loading of the MCM complex occurs at the nuclear-matrix just before DNA replication begins.
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  • * Mild cooling triggers changes in translation initiation factors and primarily reduces global protein synthesis rates by phosphorylating eEF2, which is controlled by eEF2K.
  • * The activation of eEF2K is largely due to Ca2+ ion release from the endoplasmic reticulum, offering potential avenues to restore protein synthesis and applications in both medical and industrial fields.
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One of the key cellular responses to stress is the attenuation of mRNA translation and protein synthesis via the phosphorylation of eIF2α (eukaryotic translation initiation factor 2α). This is mediated by four eIF2α kinases and it has been suggested that each kinase is specific to the cellular stress imposed. In the present study, we show that both PERK (PKR-like endoplasmic reticulum kinase/eIF2α kinase 3) and GCN2 (general control non-derepressible 2/eIF2α kinase 4) are required for the stress responses associated with conditions encountered by cells overexpressing secreted recombinant protein.

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eIF3 (eukaryotic initiation factor 3) is the largest and most complex eukaryotic mRNA translation factor in terms of the number of protein components or subunits. In mammals, eIF3 is composed of 13 different polypeptide subunits, of which five, i.e.

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  • SIRT1 is a deacetylase linked to various cellular processes and negatively correlates with cancer survival; AROS is the first identified post-transcriptional regulator enhancing SIRT1 activity and its impact on the p53 protein.
  • Research indicates that AROS affects p53 acetylation differently depending on the cell type, suppressing it primarily under stress conditions, while SIRT1 consistently suppresses p53 across various conditions.
  • Knocking down AROS leads to apoptosis in cancer cells independently of p53 activation, suggesting that AROS may play a critical role in promoting cancer cell survival without being necessary for the viability of non-cancer cells.
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  • AROS (Active regulator of SIRT1) binds to and activates SIRT1, which is crucial for deacetylation, while also interacting with RPS19, a protein linked to ribosome formation and various diseases.
  • * AROS is localized in the nucleolus and cytoplasmic ribosomes, and its presence was confirmed using techniques like confocal immunofluorescence and RNA interference (RNAi) to study its localization.
  • * Depleting AROS impairs ribosome biogenesis and alters ribosomal RNA processing, leading to lower levels of 40S subunits and reduced protein synthesis, while also increasing phosphorylation of eIF2α, which is significant for protein translation dynamics.
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SIRT1 is an NAD-dependent deacetylase and epigenetic regulator essential for normal mammalian development and homeostasis. Here we describe a human SIRT1 splice variant, designated SIRT1-Δ2/9, in which the deacetylase coding sequence is lost due to splicing between exons 2 and 9. This work aimed to determine if SIRT1-Δ2/9 is a novel functional product of the SIRT1 gene.

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