Ecosystem responses to climate change at a Low Arctic and a High Arctic long-term research site.

Long-term measurements of ecological effects of warming are often not statistically significant because of annual variability or signal noise. These are reduced in indicators that filter or reduce the noise around the signal and allow effects of climate warming to emerge. In this way, certain indicators act as medium pass filters integrating the signal over years-to-decades.

Microbes in nature are limited by carbon and energy: the starving-survival lifestyle in soil and consequences for estimating microbial rates.

Understanding microbial transformations in soils is important for predicting future carbon sequestration and nutrient cycling. This review questions some methods of assessing one key microbial process, the uptake of labile organic compounds. First, soil microbes have a starving-survival life style of dormancy, arrested activity, and low activity.

Salt marsh sediment diversity: a test of the variability of the rare biosphere among environmental replicates.

Much of the phylogenetic diversity in microbial systems arises from rare taxa that comprise the long tail of taxon rank distribution curves. This vast diversity presents a challenge to testing hypotheses about the effects of perturbations on microbial community composition because variability of rare taxa among environmental replicates may be sufficiently large that it would require a prohibitive degree of sequencing to discern differences between samples. In this study we used pyrosequencing of 16S rRNA tags to examine the diversity and within-site variability of salt marsh sediment bacteria.

Multi-decadal changes in tundra environments and ecosystems: synthesis of the International Polar Year-Back to the Future project (IPY-BTF).

Understanding the responses of tundra systems to global change has global implications. Most tundra regions lack sustained environmental monitoring and one of the only ways to document multi-decadal change is to resample historic research sites. The International Polar Year (IPY) provided a unique opportunity for such research through the Back to the Future (BTF) project (IPY project #512).

Changes in tundra pond limnology: re-sampling Alaskan ponds after 40 years.

The arctic tundra ponds at the International Biological Program (IBP) site in Barrow, AK, were studied extensively in the 1970s; however, very little aquatic research has been conducted there for over three decades. Due to the rapid climate changes already occurring in northern Alaska, identifying any changes in the ponds' structure and function over the past 30-40 years can help identify any potential climate-related impacts. Current research on the IBP ponds has revealed significant changes in the physical, chemical, and biological characteristics of these ponds over time.

Microbial community composition in sediments resists perturbation by nutrient enrichment.

Functional redundancy in bacterial communities is expected to allow microbial assemblages to survive perturbation by allowing continuity in function despite compositional changes in communities. Recent evidence suggests, however, that microbial communities change both composition and function as a result of disturbance. We present evidence for a third response: resistance.

Processing arctic eddy-flux data using a simple carbon-exchange model embedded in the ensemble Kalman filter.

Continuous time-series estimates of net ecosystem carbon exchange (NEE) are routinely made using eddy covariance techniques. Identifying and compensating for errors in the NEE time series can be automated using a signal processing filter like the ensemble Kalman filter (EnKF). The EnKF compares each measurement in the time series to a model prediction and updates the NEE estimate by weighting the measurement and model prediction relative to a specified measurement error estimate and an estimate of the model-prediction error that is continuously updated based on model predictions of earlier measurements in the time series.

Salt marsh sediment bacteria: their distribution and response to external nutrient inputs.

A primary focus among microbial ecologists in recent years has been to understand controls on the distribution of microorganisms in various habitats. Much less attention has been paid to the way that environmental disturbance interacts with processes that regulate bacterial community composition. We determined how human disturbance affected the distribution and community structure of salt marsh sediment bacteria by using denaturing gradient gel electrophoresis of 16S rRNA in five different habitats in each of four salt marshes located in northeastern Massachusetts, USA.

Mycorrhizal fungi supply nitrogen to host plants in Arctic tundra and boreal forests: 15N is the key signal.

Symbiotic fungi's role in providing nitrogen to host plants is well-studied in tundra at Toolik Lake, Alaska, but little-studied in the adjoining boreal forest ecosystem. Along a 570 km north-south transect from the Yukon River to the North Slope of Alaska, the 15N content was strongly reduced in ectomycorrhizal and ericoid mycorrhizal plants including Betula, Salix, Picea mariana (P. Mill.

Biogeography of bacterioplankton in lakes and streams of an Arctic tundra catchment.

Bacterioplankton community composition was compared across 10 lakes and 14 streams within the catchment of Toolik Lake, a tundra lake in Arctic Alaska, during seven surveys conducted over three years using denaturing gradient gel electrophoresis (DGGE) of PCR-amplified rDNA. Bacterioplankton communities in streams draining tundra were very different than those in streams draining lakes. Communities in streams draining lakes were similar to communities in lakes.

Effects of ultraviolet radiation and contaminant-related stressors on arctic freshwater ecosystems.

Climate change is likely to act as a multiple stressor, leading to cumulative and/or synergistic impacts on aquatic systems. Projected increases in temperature and corresponding alterations in precipitation regimes will enhance contaminant influxes to aquatic systems, and independently increase the susceptibility of aquatic organisms to contaminant exposure and effects. The consequences for the biota will in most cases be additive (cumulative) and multiplicative (synergistic).

Climate change effects on aquatic biota, ecosystem structure and function.

Climate change is projected to cause significant alterations to aquatic biogeochemical processes, (including carbon dynamics), aquatic food web structure, dynamics and biodiversity, primary and secondary production; and, affect the range, distribution and habitat quality/quantity of aquatic mammals and waterfowl. Projected enhanced permafrost thawing is very likely to increase nutrient, sediment, and carbon loadings to aquatic systems, resulting in both positive and negative effects on freshwater chemistry. Nutrient and carbon enrichment will enhance nutrient cycling and productivity, and alter the generation and consumption of carbon-based trace gases.

Climate change effects on hydroecology of arctic freshwater ecosystems.

In general, the arctic freshwater-terrestrial system will warm more rapidly than the global average, particularly during the autumn and winter season. The decline or loss of many cryospheric components and a shift from a nival to an increasingly pluvial system will produce numerous physical effects on freshwater ecosystems. Of particular note will be reductions in the dominance of the spring freshet and changes in the intensity of river-ice breakup.

Historical changes in arctic freshwater ecosystems.

Various types of ecosystem-based climate proxies have been used to assess past arctic change. Although lotic records are relatively poor because of the constant reworking of riverine material, high-quality lentic data have been assembled back to the end of the Pleistocene and deglaciation of the circumpolar Arctic. In general, climatic variations in the Holocene, partly due to changes in the shrinking effect of glacier coverage, produced significant temporal and spatial variations in arctic hydrology and freshwater ecosystems.

General features of the arctic relevant to climate change in freshwater ecosystems.

Large variations exist in the size, abundance and biota of the two principal categories of freshwater ecosystems, lotic (flowing water; e.g., rivers, streams, deltas and estuaries) and lentic (standing water; lakes, ponds and wetlands) found across the circumpolar Arctic.

Climate impacts on arctic freshwater ecosystems and fisheries: background, rationale and approach of the Arctic Climate Impact Assessment (ACIA).

Changes in climate and ultraviolet radiation levels in the Arctic will have far-reaching impacts, affecting aquatic species at various trophic levels, the physical and chemical environment that makes up their habitat, and the processes that act on and within freshwater ecosystems. Interactions of climatic variables, such as temperature and precipitation, with freshwater ecosystems are highly complex and can propagate through the ecosystem in ways that are difficult to project. This is partly due to a poor understanding of arctic freshwater systems and their basic interrelationships with climate and other environmental variables, and partly due to a paucity of long-term freshwater monitoring sites and integrated hydro-ecological research programs in the Arctic.

15N in symbiotic fungi and plants estimates nitrogen and carbon flux rates in Arctic tundra.

When soil nitrogen is in short supply, most terrestrial plants form symbioses with fungi (mycorrhizae): hyphae take up soil nitrogen, transport it into plant roots, and receive plant sugars in return. In ecosystems, the transfers within the pathway fractionate nitrogen isotopes so that the natural abundance of 15N in fungi differs from that in their host plants by as much as 12% per hundred. Here we present a new method to quantify carbon and nitrogen fluxes in the symbiosis based on the fractionation against 15N during transfer of nitrogen from fungi to plant roots.

Molecular characterization of sulfate-reducing bacteria in a New England salt marsh.

Sulfate reduction, mediated by sulfate-reducing bacteria (SRB), is the dominant remineralization pathway in sediments of New England salt marshes. High sulfate reduction rates are associated with the rhizosphere of Spartina alterniflora when plants elongate aboveground. The growth process concurrently produces significant amounts of new rhizome material belowground and the plants leak dissolved organic compounds.

High overall diversity and dominance of microdiverse relationships in salt marsh sulphate-reducing bacteria.

The biogeochemistry of North Atlantic salt marshes is characterized by the interplay between the marsh grass Spartina and sulphate-reducing bacteria (SRB), which mineralize the diverse carbon substrates provided by the plants. It was hypothesized that SRB populations display high diversity within the sediment as a result of the rich spatial and chemical structuring provided by Spartina roots. A 2000-member 16S rRNA gene library, prepared with delta-proteobacterial SRB-selective primers, was analysed for diversity patterns and phylogenetic relationships.

Microbial biogeography along an estuarine salinity gradient: combined influences of bacterial growth and residence time.

Shifts in bacterioplankton community composition along the salinity gradient of the Parker River estuary and Plum Island Sound, in northeastern Massachusetts, were related to residence time and bacterial community doubling time in spring, summer, and fall seasons. Bacterial community composition was characterized with denaturing gradient gel electrophoresis (DGGE) of PCR-amplified 16S ribosomal DNA. Average community doubling time was calculated from bacterial production ([(14)C]leucine incorporation) and bacterial abundance (direct counts).

Bacterioplankton community shifts in an arctic lake correlate with seasonal changes in organic matter source.

Seasonal shifts in bacterioplankton community composition in Toolik Lake, a tundra lake on the North Slope of Alaska, were related to shifts in the source (terrestrial versus phytoplankton) and lability of dissolved organic matter (DOM). A shift in community composition, measured by denaturing gradient gel electrophoresis (DGGE) of 16S rRNA genes, occurred at 4 degrees C in near-surface waters beneath seasonal ice and snow cover in spring. This shift was associated with an annual peak in bacterial productivity ([(14)C]leucine incorporation) driven by the large influx of labile terrestrial DOM associated with snow meltwater.

Aggregating Fine-Scale Ecological Knowledge to Model Coarser-Scale Attributes of Ecosystems.

As regional and global scales become more important to ecologists, methods must be developed for the application of existing fine-scale knowledge to predict coarser-scale ecosystem properties. This generally involves some form of model in which fine-scale components are aggregated. This aggregation is necessary to avoid the cumulative error associated with the estimation of a large number of parameters.

A general biogeochemical model describing the responses of the C and N cycles in terrestrial ecosystems to changes in CO(2), climate, and N deposition.

A model that simulates carbon (C) and nitrogen (N) cycles in terrestrial ecosystems is developed. The model is based on the principle that the responses of terrestrial ecosystems to changes in CO(2), climate, and N deposition will encompass enzymatic responses, shifts in tissue stoichiometry, changes in biomass allocation among plant tissues, altered rates of soil organic matter turnover and N mineralization, and ultimately a redistribution of C and N between vegetation and soils. The model is a highly aggregated, process-based, biogeochemical model designed to examine changes in the fluxes and allocation of C and N among foliage, fine roots, stems, and soils in response to changes in atmospheric CO(2) concentration, temperature, soil water, irradiance, and inorganic nitrogen inputs.