Publications by authors named "Joao C Sabino"

DNA oxidation by ten-eleven translocation (TET) family enzymes is essential for epigenetic reprogramming. The conversion of 5-methylcytosine (5mC) into 5-hydroxymethylcytosine (5hmC) initiates developmental and cell-type-specific transcriptional programs through mechanisms that include changes in the chromatin structure. Here, we show that the presence of 5hmC in the transcribed gene promotes the annealing of the nascent RNA to the template DNA strand, leading to the formation of an R-loop.

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The mechanisms by which the nuclear lamina of tumor cells influences tumor growth and migration are highly disputed. Lamin A and its variant lamin C are key lamina proteins that control nucleus stiffness and chromatin conformation. Downregulation of lamin A/C in two prototypic metastatic lines, B16F10 melanoma and E0771 breast carcinoma, facilitated cell squeezing through rigid pores, and reduced heterochromatin content.

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Article Synopsis
  • The study investigates how DNA double-strand breaks (DSBs) impact ongoing transcription, addressing a gap in understanding due to the lack of tools for measuring transcription dynamics during DNA damage.
  • Researchers developed new reporter systems that visualize individual nascent RNAs when a DSB is induced at specific chromatin locations, revealing differing effects on transcription based on the DSB's location.
  • The findings indicate that while DSBs halt preexisting transcription, those at a promoter-proximal region lead to irreversible suppression, whereas DSBs in internal exons allow for transcription recovery and increased bidirectional transcription initiation.
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Ataxia telangiectasia mutated and Rad3-related (ATR) kinase is a key factor activated by DNA damage and replication stress. An alternative pathway for ATR activation has been proposed to occur via stalled RNA polymerase II (RNAPII). However, how RNAPII might signal to activate ATR remains unknown.

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