Publications by authors named "Jiyuan Zhou"

Mendelian randomization uses genetic variants as instrumental variables to estimate the causal effect of exposure on outcome from observational data. A common challenge in Mendelian randomization is that many genetic variants are only modestly or even weakly associated with the exposure of interest, a setting known as many weak instruments. Conventional methods, such as the popular inverse-variance weighted (IVW) estimator, could be heavily biased toward zero when the instrument strength is weak.

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  • ADHD is a chronic psychiatric disorder significantly influenced by genetic factors, yet understanding of the role of biological processes such as alternative splicing and DNA methylation in its development is limited.* ! -
  • This study conducted a multi-omics analysis to investigate the causal effects of gene expression and DNA methylation on ADHD across 14 brain tissues, using advanced statistical methods.* ! -
  • The research identified 866 genes with significant causal effects on ADHD and 106 regulatory pathways influenced by DNA methylation, providing insights for future studies on ADHD's molecular mechanisms and implications for treatment.* !
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Mild photothermal therapy (PTT) shows the potential for chemosensitization by tumor-localized P-glycoprotein (P-gp) modulation. However, conventional mild PTT struggles with real-time uniform temperature control, obscuring the temperature-performance relationship and resulting in thermal damage. Besides, the time-performance relationship and the underlying mechanism of mild PTT-mediated P-gp reversal remains elusive.

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Timely accurate and cost-efficient detection of colorectal cancer (CRC) is of great clinical importance. This study aims to establish prediction models for detecting CRC using plasma cell-free DNA (cfDNA) fragmentomic features. Whole-genome sequencing (WGS) was performed on cfDNA from 620 participants, including healthy individuals, patients with benign colorectal diseases and CRC patients.

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Colorectal cancer, the third most prevalent malignant cancer, is associated with poor prognosis. Recent studies have investigated the mechanisms underlying cuproptosis and disulfidptosis in colorectal cancer. However, whether genes linked to these processes impact the prognosis of colorectal cancer patients through analogous mechanisms remains unclear.

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Introduction: Alzheimer's disease (AD) is a complex neurodegenerative disease with high heritability. Compared to autosomes, a higher proportion of disorder-associated genes on X chromosome are expressed in the brain. However, only a few studies focused on the identification of the susceptibility loci for AD on X chromosome.

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Objective: This study aims to build a prognostic model of hepatocellular carcinoma (HCC) with ferroptosis-associated genes and explore their molecular function.

Methods: Gene expression data and clinical information were obtained from the Gene Expression Omnibus (GEO) and The Cancer Genome Atlas (TCGA) databases and the International Cancer Genome Consortium (ICGC). A ferroptosis-associated gene set was obtained from the FerrDb database to identify differentially expressed genes.

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  • The paper introduces a new Bayesian method for estimating the degree of skewed X chromosome inactivation (XCI-S), denoted as γ, using data from both general pedigrees and unrelated females, which is a new approach compared to existing methods that only use unrelated females.
  • It incorporates statistical techniques like truncated normal prior and eigenvalue decomposition to enhance computational efficiency while providing point estimates and credible intervals for γ.
  • Simulation studies demonstrate that this mixed data approach improves the accuracy and precision of γ estimations, and the method is tested using real-world data from the Minnesota Center for Twin and Family Research.
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Nano-tungsten carbide (nano-WC) is widely used in composite materials due to its special physical and chemical properties. Owing to their small size, nano-WC nanoparticles easily enter organisms through the respiratory tract, which may cause health hazards. However, only a few studies have reported the toxicity of nano-WC.

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Background: HIV-positive men who have sex with men (MSM) tend to have high syphilis incidence. Our objective is to evaluate the prevalence of syphilis and determine the risk factors of syphilis among HIV-positive MSM.

Methods: A cross-sectional study with convenience sampling was performed among HIV-positive MSM in six cities of Guangdong Province from June 2020 to August 2021.

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  • Current chemotherapies struggle with drug penetration and effective targeting of metastasis-related pathways due to the influence of cancer-associated fibroblasts (CAFs) in the tumor microenvironment.
  • Researchers created a new drug delivery system using a pH-sensitive methotrexate-chitosan conjugate combined with quercetin, which allows for targeted drug release and deeper tumor infiltration.
  • The study shows that this innovative approach not only increases drug availability but also effectively inhibits metastasis by disrupting CAF influence and preventing tumor cell invasion and transitions.
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The genome-wide association study is an elementary tool to assess the genetic contribution to complex human traits. However, such association tests are mainly proposed for autosomes, and less attention has been given to methods for identifying loci on the X chromosome due to their distinct biological features. In addition, the existing association tests for quantitative traits on the X chromosome either fail to incorporate the information of males or only detect variance heterogeneity.

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  • The paper discusses the issue of skewed X chromosome inactivation (XCI-S) related to certain X-linked diseases and introduces new methods for estimating the degree of XCI-S in genes, referred to as γ.
  • It proposes point estimates and confidence intervals for γ using Fieller's methods and explores Bayesian approaches (GBN and GBU) to improve estimation accuracy.
  • Simulation results show that the GBN method is superior for estimating γ without producing extreme or non-informative results, and it is applied to real-world data from the Minnesota Center for Twin and Family Research.
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Background: X chromosome inactivation (XCI) is an epigenetic phenomenon that one of two X chromosomes in females is transcriptionally silenced during early embryonic development. Skewed XCI has been reported to be associated with some X-linked diseases. There have been several methods measuring the degree of the skewness of XCI.

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  • Behavioral disinhibition affects mental health and can lead to negative outcomes such as drug abuse and violent crime, impacting overall quality of life.
  • Recent research has identified genetic variants (loci) associated with behavioral disinhibition, but previous studies did not consider parent-of-origin effects, potentially underestimating genetic influences.
  • This article analyzed five behavioral disinhibition-related traits using a linear mixed model, uncovering nine significant SNPs, some linked to neurological disorders, while others are new findings that require further investigation.
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Background: The purpose of this study was to develop and validate a simple-to-use nomogram for the prediction of syphilis infection among men who have sex with men (MSM) in Guangdong Province.

Methods: A serial cross-sectional data of 2184 MSM from 2017 to 2019 was used to develop and validate the nomogram risk assessment model. The eligible MSM were randomly assigned to the training and validation dataset.

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Background: Persistent synovial hyperplasia with inflammation in rheumatoid arthritis is one of the main pathogeneses of refractory rheumatoid arthritis (RRA). Photodynamic therapy (PDT) causes less trauma than steroid injections or arthroscopic synovectomy while providing stronger targeting and more durable curative effects. The aim of this trial was to evaluate the short-, medium-, and long-term clinical efficacy of PDT when applied as a treatment for RRA synovial hyperplasia and synovitis.

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Background: X chromosome inactivation (XCI) is that one of two chromosomes in mammalian females is silenced during early development of embryos. There has been a statistical measure for the degree of the skewness of XCI for qualitative traits. However, no method is available for such task at quantitative trait loci.

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A limited infiltration and the subsequent low effective drug concentration result in poor chemotherapeutic outcomes against tumors, and even further promote tumor resistance and metastatic. Herein, iRGD-modified graphene oxide (GO) nanosheets (IPHG) are developed for the intensive treatment of metastatic tumors using focus-specific penetrated delivery together with photothermal therapy-mediated chemosensitization and photothermal therapy-strengthened integrin targeting-based antimigration. In vitro and in vivo data verified the mechanism of the tumor-selective infiltration of IPHG is based on a rigid 2D structure-associated advantage regarding hemodynamics and endothelial contact, followed by iRGD-endowed transendothelial and intratumoral transport.

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Background: Persistent liver inflammatory damage is the main risk factor for developing liver fibrosis, cirrhosis, and even hepatocellular carcinoma in chronic hepatitis B (CHB) patients. Thus, accurate prediction of the degree of liver inflammation is a high priority and a growing medical need.

Aim: To build an effective and robust non-invasive model for predicting hepatitis B-related hepatic inflammation.

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On a crowdsourcing platform, in order to cheat for rewards or sabotage the crowdsourcing processes, spam workers may submit numerous erroneous answers to the tasks published by requesters. This type of behavior extremely reduces the completion rate of tasks and the enthusiasm of honest users, which may lead a crowdsourcing platform to a failure. Defending against malicious attacks is an important issue in crowdsourcing, which has been extensively addressed by existing methods, e.

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Remarkable advances in nano delivery systems have provided new hope for tumor prevention, diagnosis and treatment. However, only limited clinical therapeutic effects against solid tumors were achieved. One of the main reasons is the presence of abundant physiological and pathological barriers in vivo that impair tumoral penetration and distribution of the nanodrugs.

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The phenomenon of COVID-19 patients tested positive for SARS-CoV-2 after discharge (redetectable as positive, RP) emerged globally. The data of incidence rate and risk factors for RP event and the clinical features of RP patients may provide recommendations for virus containment and cases management for COVID-19. We prospectively collected and analyzed the epidemiological, clinical and virological data from 285 adult patients with COVID-19 and acquired their definite clinical outcome (getting PCR positive or not during post-discharge surveillance).

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