Publications by authors named "Jinwei Xin"

The severe conditions at high altitudes, where yaks inhabit, contribute to delayed muscular growth and compromised tenderness of their muscle tissue. Myosatellite cells are responsible for the growth and regeneration of skeletal muscle after birth and have the potential to proliferate and differentiate, its development is closely related to meat quality, and the nuclear receptor gene is involved in muscle formation and skeletal muscle regulation. Therefore, in order to understand the effect of on muscle satellite cells, we identified the mRNA expression levels of marker genes specifically expressed in muscle satellite cells at different stages to determine the type of cells isolated.

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Yak (Bos grunniens) is the only large mammal species in the Qinghai-Tibet Plateau. The most of the studies in yak remain confined for the main contributor of meat, which requires a good understanding of muscle growth. Matrix metalloproteinases-2 (MMP-2) and MMP-9 are widely expressed in mammal tissues they mainly degrade collagen in the extracellular matrix for muscle development.

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Protein lysine lactylation, a recently discovered post-translational modification (PTM), is prevalent across tissues and cells of diverse species, serving as a regulator of glycolytic flux and biological metabolism. The yak (), a species that has inhabited the Qinghai-Tibetan Plateau for millennia, has evolved intricate adaptive mechanisms to cope with the region's unique geographical and climatic conditions, exhibiting remarkable energy utilization and metabolic efficiency. Nonetheless, the specific landscape of lysine lactylation in yaks remains poorly understood.

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Article Synopsis
  • The Yak Genome Database is a multi-omics resource designed to enhance our understanding of the genetic makeup and adaptive traits of yaks, which thrive in high-altitude environments.
  • It houses extensive data, including 26,518 genes, 62 transcriptomes, 144,309 proteome spectra, and 22,478 methylation sites, offering detailed insights into yak biology.
  • This database serves as a vital platform for researchers, facilitating data sharing and exploration to aid in studies of yak development, high-altitude adaptation mechanisms, and molecular breeding efforts.
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  • The study focuses on identifying single-nucleotide polymorphisms (SNPs) in the yak genome that are associated with body weight, a key factor in their economic value on the Qinghai-Tibet Plateau.
  • Analysis of 480 yaks from three breeds revealed 12 SNPs in males and 4 in females that show a significant relationship with body weight, particularly the SNP AX-174555047, which influences hormone levels affecting weight.
  • The findings suggest that the SNP AX-174555047 could be a useful biomarker in yak breeding programs, though further research is needed to confirm its effects on weight through gene expression mechanisms.
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Rumen microorganisms play important roles in the healthy growth of yaks. This study investigated changes in yak rumen microbiome during natural grazing at the warm seasons and supplementary feeding at cold seasons. High-throughput sequencing of 16S rRNA and metagenome analysis were conducted to investigate the structures and functions of yak rumen microbial communities.

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Yak has evolved specific adaptative mechanisms to high-altitude environment. Up to date, only a few studies reported the DNA methylation in yak. In the present study, genome-wide DNA methylome and transcriptome profiles in lung, mammary, and biceps brachii muscle tissues were compared between yak and three cattle breeds (Tibetan cattle, Sanjiang cattle, and Holstein cattle).

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Matrix metalloproteinase (MMP)-2 and MMP-9 are a family of Zn and Ca-dependent gelatinase MMPs that regulate muscle development and disease treatment, and they are highly conservative during biological evolution. Despite increasing knowledge of genes, their evolutionary mechanism for functional adaption remains unclear. Moreover, analysis of codon usage bias (CUB) is reliable to understand evolutionary associations.

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  • Both 5-methylcytosine (5mC) and 5-hydroxymethylcytosine (5hmC) are key epigenetic modifications influencing brain development, yet little is known about their patterns in high-altitude animals like yaks.
  • Using advanced sequencing techniques, researchers created the first comprehensive maps of these modifications in various brain regions (brain, brainstem, cerebellum, and hypothalamus) of yaks and cattle.
  • Results showed significant differences in 5mC and 5hmC levels, particularly a decrease in 5mC and an increase in 5hmC in the hypothalamus, indicating a potential impact on gene regulation related to neuromod
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  • Yaks have unique lung and heart adaptations for high-altitude living, but the specific molecular mechanisms are not well understood.
  • A study compared the proteins in the lung and heart tissues of yaks to three cattle strains using advanced proteomic techniques, identifying over 7,200 proteins and numerous proteins that are differentially abundant.
  • The analysis revealed specific protein pathways related to immune function and cardiac performance that may explain how yaks manage low oxygen levels and maintain heart function in high altitudes.
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Gut microbiota are closely linked to host health and adaptability to different geographical environments. However, information on the influence of different geographical conditions on the intestinal microbiota of yaks is limited. In this study, 18 yak fecal samples were collected from three regions of China, namely Shangri-la, Lhasa, and Yushu, and were analyzed via high-throughput sequencing.

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Background: The yak () is an important livestock species that can survive the extremely cold, harsh, and oxygen-poor conditions of the Qinghai-Tibetan Plateau and provide meat, milk, and transportation for the Tibetans living there. However, the regulatory network that drive this hypoxic adaptation remain elusive.

Results: The heart tissues from LeiRoqi (LWQY) yak and their related cattle () breeds, which are two native cattle breeds located in high altitude (HAC) and low altitude (LAC) regions, respectively, were collected for RNA sequencing.

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Capsaicin (CAP) is the main pungent component in capsicum fruits. Eating too much CAP leads to gastrointestinal injury. Previously, Qingke β-glucan combined with β-glucan-utilizing Lactobacillus plantarum S58 (LP.

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Background: On the Qinghai-Tibet Plateau, known as the roof ridge of the world, the yak is a precious cattle species that has been indispensable to the human beings living in this high-altitude area. However, the origin of domestication, dispersal route, and the divergence of domestic yaks from different areas are poorly understood.

Results: Here, we resequenced the genome of 91 domestic yak individuals from 31 populations and 1 wild yaks throughout China.

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Background: Domestic yaks play an indispensable role in sustaining the livelihood of Tibetans and other ethnic groups on the Qinghai-Tibetan Plateau (QTP), by providing milk and meat. They have evolved numerous physiological adaptations to high-altitude environment, including strong blood oxygen transportation capabilities and high metabolism. The roles of DNA methylation and gene expression in milk production and high-altitudes adaptation need further exploration.

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Article Synopsis
  • - The study investigates how yaks have adapted to high-altitude living by focusing on long non-coding RNAs (lncRNAs) in their gluteus muscle compared to different cattle breeds.
  • - Researchers found that yaks have higher expressions of genes related to fatty acid oxidation and lower expressions of glucose metabolism genes, suggesting a shift in energy use to adapt to their environment.
  • - The findings also indicate unique lncRNA functions that may help yaks manage stress and muscle function, with results showing differences in calcium handling and muscle contraction mechanisms when compared to cattle species.
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Background: miRNAs play an important role in regulating normal animal development. Muscle tissue and fat metabolism are important for maintaining energy balance in animals. Yak has important agricultural and economic importance as it provides milk, meat, and hair.

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  • Yak exhibits unique adaptations to the high-altitude Qinghai-Tibetan Plateau, and a study analyzed the proteomic profiles of yak gluteus muscle compared to various cattle strains to understand these mechanisms.
  • The research identified significant differences in protein expression: yak had 20, 364, and 143 upregulated proteins compared to Tibetan, Holstein, and Sanjiang cattle, respectively, with many related to energy processes like oxidative phosphorylation.
  • Key proteins associated with increased mitochondrial capacity and protection against oxidative damage were found in yaks, indicating their enhanced metabolic function is a long-term adaptation to survive in high-altitude environments.
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  • Yak are crucial livestock for people living in the harsh environments of the Qinghai-Tibetan Plateau and the Himalayas, highlighting the need for a complete genome assembly for better genetic study.
  • This study presents a high-quality chromosome-scale yak genome assembly (BosGru_PB_v1.0) using advanced long-read sequencing, improving upon previous fragmented versions by increasing sequence continuity and reducing ambiguities.
  • The research also generated genome assemblies for multiple domestic yak breeds and one wild yak, revealing genetic diversity and identifying unique breed-specific genes, which can help in distinguishing different yak breeds.
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  • The yak, an essential animal on the Qinghai-Tibet Plateau, has adapted its immune system to thrive in high-altitude environments.
  • A study analyzed gene expression in the lungs and gluteus tissues of yaks at various ages (6, 30, 60, and 90 months) to understand how immune function changes during development.
  • Findings revealed that immune activation peaked at 6 and 90 months, suggesting increased resistance to infections in younger yaks, while higher activation in older yaks may be linked to muscle injuries and regeneration.
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Yak () is an unique ruminant species in the Qinghai-Tibetan Plateau (QTP). The ruminant gastrointestinal tract (GIT) microbiota is not only associated with the nutrients metabolism, but also contributes to the host's local adaptation. Examining the microbiota between cattle and yak in different geography could improve our understanding about the role of microbiota in metabolism and adaptation.

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  • The study investigates how yaks are able to adapt to the high-altitude environment of the Qinghai-Tibet Plateau compared to low-altitude cattle species through molecular mechanisms.* -
  • The researchers found that specific genes related to red blood cell development and immune response are differently expressed in yaks, which may help them cope with conditions like lower oxygen levels and reduced risk of disease.* -
  • Changes in gene expression for blood coagulation and ion channel activity in yaks suggest adaptations that minimize the risk of pulmonary edema, making them well-suited for high-altitude living.*
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Background: Genomic structural variation represents a source for genetic and phenotypic variation, which may be subject to selection during the environmental adaptation and population differentiation. Here, we described a genome-wide analysis of copy number variations (CNVs) in 16 populations of yak based on genome resequencing data and CNV-based cluster analyses of these populations.

Results: In total, we identified 51,461 CNV events and defined 3174 copy number variation regions (CNVRs) that covered 163.

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  • * Results indicated high genetic variability across these groups, with a high average polymorphic information content (PIC), particularly noting that Sangri Yak showed the greatest diversity.
  • * The research suggests eastern Tibetan yaks have greater genetic diversity than western ones, indicating that this region may be a key area for yak evolution, and the selected microsatellite markers are effective for evaluating yak genetics.
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