Publications by authors named "Jila Yavarian"

Ebola virus (EBOV) is a life-threatening and virulent pathogen that kills approximately 90 percent of infected individuals. Nowadays, microRNAs (miRNAs) have become a promising option for more efficient screening, diagnosis, monitoring, and therapy of numerous diseases such as cancer, stroke, Alzheimer's, and viral infections. Recent studies have revealed the role of EBOV and host-encoded miRNAs in Ebola virus disease (EVD), opening an avenue for developing novel drugs against EVD and diagnostic panels for EBOV infection.

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  • The influenza virus (IFV) is a significant global health concern that affects both health systems and economies, highlighting the need to understand how it causes disease.
  • Ferroptosis, a specific type of cell death linked to iron and lipid damage, plays a role in the body's response to IFV and influences inflammation during the infection.
  • Investigating how ferroptosis works in the context of IFV could lead to new drug treatments that use ferroptosis inhibitors to combat viral infections effectively.
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Background: Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) is a highly contagious virus that uses angiotensin converting enzyme 2 (ACE2), a pivotal member of the renin-angiotensin system (RAS), as its cell-entry receptor. Another member of the RAS, angiotensin II (Ang II), is the major biologically active component in this system. There is growing evidence suggesting that serum miRNAs could serve as prognostic biomarkers for SARS-CoV-2 infection and regulate ACE2 expression.

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Background: This study aims to explore the potential of utilizing the expression levels of cannabinoid receptor 2 (CB2), μ-opioid receptor (MOR), MCP-1, IL-17, IFN-γ, and osteopontin as predictors for the severity of SARS-CoV-2 infection. The overarching goal is to delineate the pathogenic mechanisms associated with SARS-CoV-2.

Methods: Using quantitative Real-time PCR, we analyzed the gene expression levels of CB2 and MOR in nasopharynx specimens obtained from patients diagnosed with SARS-CoV-2 infection, with 46 individuals classified as having severe symptoms and 46 as non-severe.

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  • This study examined the mutations and variants of SARS-CoV-2 during the fourth wave of the COVID-19 pandemic in Tehran, Iran, using next generation sequencing (NGS).
  • Researchers sequenced the genomes of 15 COVID-19 patients from different stages of the fourth wave to analyze changes over time.
  • They identified dominant variants like alpha and delta, with notable mutations such as D614G and others, highlighting the importance of monitoring these changes for better understanding and treatment of the virus.
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Background: Following rubella virus control, the most important cause of congenital infections is human cytomegalovirus (HCMV). Congenital CMV (cCMV) may happen both in primary and non-primary maternal infections. The present study aimed to screen cCMV in symptomatic newborns suspected of congenital rubella syndrome (CRS) in Iran.

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Background: The role of the lipoxygenase (LOX) and cyclooxygenase (COX) enzymes in maintaining cellular homeostasis and regulating immune responses promoted us in this study to analyze the pattern of changes in 15-lipoxygenase and cyclooxygenase isoforms and their related cytokines in SARS-CoV-2 infection.

Methods: 15-LOX-1, 15-LOX-2, COX-1 and COX-2 gene expression levels were determined using qRT-PCR in nasopharynx specimens from patients with severe [N = 40] and non-severe [N = 40] confirmed SARS-CoV-2 infections and healthy controls. Circulating levels of lL-6, lL-10, PGE2, and IFN-γ were measured in patients and healthy controls using ELISA assay.

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Background: Human orthopneumovirus (HOPV) or respiratory syncytial virus (RSV) is one of the important causes of acute respiratory infections (ARIs) during the cold months of the year worldwide. Many countries have reported an absence of ARIs due to HOPV during the winter of 2020-2021 associated with preventive measures to reduce the spread of SARS-CoV2. However, with the reduction of COVID-19 public health restrictions and the absence of immunity in the community due to the lack of exposure in the previous season, many countries had a delayed HOPV outbreak.

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Cancer treatment is one of the most challenging topics in medical sciences. Different methods such as chemotherapy, tumor surgery, and immune checkpoint inhibitors therapy (ICIs) are potential approaches to treating cancer and killing tumor cells, but clinical studies have shown that they have been successful for a limited group of patients. Using viruses as a treatment can be considered as an effective treatment in the field of medicine.

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Many evidence suggests that long-lasting infection can develop with severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2). This occurrence has been widely described in immunocompromised individuals. In these patients, ineffective clearance of virus infection provides an opportunity for developing immune escape mutants.

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  • Genomic surveillance of SARS-CoV-2 is essential for tracking and understanding virus variants, especially in terms of transmissibility and severity; a study in Iran analyzed 330 genomes from the sixth wave of COVID-19 and compared them to previous waves.
  • The sequencing process involved extracting viral RNA from clinical samples and employing advanced sequencing technologies, revealing a shift in prevalent variants over six pandemic waves, from clades like V and L in the first wave to the Omicron variant in the sixth.
  • The findings highlight the importance of genome sequencing for detecting new variants, guiding public health responses, and preparing Iran for monitoring other respiratory diseases beyond COVID-19.
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Background And Objectives: Human rhinoviruses (HRVs) and human adenoviruses (HAdVs) are among the most prevalent viruses in hospitalized patients with severe acute respiratory infection (SARI). This study aimed to evaluate the molecular characterization of HRV and HAdV in hospitalized patients with SARI, who aged ≤ 18 years in Tehran, Iran.

Materials And Methods: To detect these two viruses, a conventional nested RT-PCR (Reverse transcription-polymerase chain reaction) assay was performed on 264 throat swabs collected from December 2018 to March 2019.

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Background: Human coronaviruses (HCoVs) 229E, OC43, HKU1, and NL63 are common viruses that continuously circulate in the human population. Previous studies showed the circulation of HCoVs during the cold months in Iran. We studied the circulation of HCoVs during coronavirus disease 2019 (COVID-19) pandemic to find the impact of pandemic on the circulation of these viruses.

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Background And Objectives: Neuraminidase inhibitors (NAIs) as an imperative antiviral for influenza prophylaxis and treatment are being consumed worldwide. Increasing use of these antivirals might be associated with drug resistance. Regarding the significance of these variations, this study aimed to investigate the mutations occurring in the NA gene of influenza A viruses leading to oseltamivir resistance during 2017-2019 in Iran.

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Background: Human adenovirus (HAdV) is an important viral agent in children which can lead to severe acute respiratory infection (SARI). Reports on molecular epidemiology of HAdVs in Iran are limited. This case-control study is conducted to compare the HAdV infection rate and molecular epidemiology among two groups of children with and without respiratory symptoms in Tehran, Iran during 2018-2019.

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The global outbreak of coronavirus disease 2019 (COVID-19), an emerging disease caused by severe acute respiratory syndrome virus-2 (SARS-CoV-2), and strict restrictions implemented to control the infection have impacted the circulation and transmission of common seasonal viruses worldwide and subsequently the rate of hospitalizations in children at young ages. Respiratory syncytial virus (RSV) surprisingly disappeared in 2020-2021 in many countries due to lockdown and precautions were taken because of the COVID-19 pandemic. Herein, we showed a notable change in the rate of hospitalization and reported an unpredictable outbreak of RSV in a small proportion of children admitted to a children's hospital in Dezful (a city in Southwest Iran) in the early spring of 2022.

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Introduction: Human cytomegalovirus (HCMV) infection is one of the most common viral complications in kidney transplant recipients. Although there are effective treatments strategies for the HCMV infection, this infection is still one of the causes of kidney transplant rejection.

Methods: A total of 246 kidney transplant recipients participated in this cross-sectional study.

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To evaluate SARS-CoV-2 genome detection using pooled samples by RT-qPCR assay, compared to individual samples. At first all samples were tested individually using two commercial methods targeting ,  and  genes. Then, four experimental groups of samples were pooled and evaluated using the same detection methods.

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  • Whole genome sequencing of SARS-CoV2 in Iran was conducted to gather data on viral lineages and variants, with 54 genomes sequenced throughout five pandemic waves.
  • The study identified various clades: V and L in the 1st wave, G, GH, and GR in the 2nd, continuing with GH and GR in the 3rd, and GRY (alpha), GK (delta), and one GH (beta) in the 4th wave, while only GK (delta) was found in the 5th.
  • Key mutations, including Spike-D614G and NSP12-P323L, were commonly observed, emphasizing the need for ongoing monitoring of SARS-CoV2 to aid in detecting new variants
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  • - The study examines the prevalence of human rhinovirus (HRV) among Iranian pilgrims with severe acute respiratory infections (SARI) during the 2017 Hajj, highlighting the health risks during this pilgrimage.
  • - Out of 104 pilgrims tested, 21 individuals (20.19%) were found to be positive for HRV, with different species identified: HRV-A21, HRV-B91, and un-typed HRV-C.
  • - The findings indicate a significant presence of HRV among pilgrims and suggest that preventative measures are crucial, as there are no vaccines or antiviral treatments available for this virus.
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Acute respiratory infections (ARIs) are one of the leading causes of illness and death among community members worldwide. Viral infections are the most common agents estimated to be involved in these patients. This study aimed to investigate the prevalence of human respiratory syncytial virus (hRSV) and severe acute respiratory syndrome coronavirus-2 (SARS-CoV-2) among children with ARIs.

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Background: In late December 2019, severe acute respiratory syndrome coronavirus 2 (SARS-CoV2), the causative agent of coronavirus disease 2019 (COVID-19), spread to almost all countries worldwide. The outbreak of this virus has been confirmed on 19th February, 2020, in Iran.

Objective: The aim of this study was to investigate the time of viral RNA clearance in swab and serum samples of COVID-19 patients having received different medications.

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  • * The review highlights the role of various viruses, including SARS-CoV-2, in inducing miscarriage and discusses the molecular mechanisms involved, such as placental dysfunction and increased maternal immune response.
  • * A comprehensive literature search over the last 20 years identified 20 viral infections linked to miscarriage, emphasizing the importance of understanding these mechanisms for better pregnancy outcomes.
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