Publications by authors named "Jiemin Xie"

Article Synopsis
  • Local associations in biology involve analyzing patterns over time, such as gene expression changes and microbial interactions, to understand complex biological dynamics.* -
  • Algorithms for local similarity analysis have been enhanced to work with next-generation sequencing data, originally designed for microarray gene expression studies, greatly impacting scientific research.* -
  • This review discusses the evolution of these algorithms, their statistical methods, and practical applications in biological time series analysis, with resources available at a dedicated GitHub page.*
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Phylogenetic tools are fundamental to the studies of evolutionary relationships. In this paper, we present , a novel high-throughput tool for alignment-free phylogenetic analysis. computes the pairwise distance matrix between molecular sequences, using seven widely accepted -mer based distance measures.

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Objective: Tongue squamous cell carcinoma (TSCC) is the most common malignant cancer in the oral cavity, with a high rate of metastasis to the neck lymphoid node. Angiopoietin-like protein 4 (ANGPTL4) and microvessel density (MVD) may be novel indicators for tumor metastasis. The aim of the present study was to investigate the expression and function of ANGPTL4 in TSCC and the relationship between ANGPTL4 and MVD.

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We establish a two-dimensional model on the coupling thickness-shear mode (TSM) vibrations of a quartz crystal resonator (QCR) carrying an array of spherical-cap (SC) viscoelastic material units. The electrical admittance of the compound QCR system is described directly in terms of the physical properties of the surface material units. The admittance spectra about the tendon stem cells (TSCs) acquired from our calculation are compared with the existing experiment data and found to be consistent with each other, indicating our model has good veracity and reliability in analyzing the mechanical properties of covered loadings.

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A two-dimensional model was established to study the dynamic characteristics of a quartz crystal resonator with the upper surface covered by an array of hemispherical material units. A frequency-dependent equivalent mass ratio was proposed to simulate the effect of the covered units on frequency shift of the resonator system. It was found that the equivalent mass ratio alternately becomes positive or negative with change of shear modulus and radius of each material unit, which indicates that the equivalent mass ratio is strongly related to the vibration mode of the covered loadings.

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