Publications by authors named "Jiaoyu Deng"

As one of the factors affecting the treatment outcomes, drug tolerance in mycobacteriosis has not been paid due attention. Genome-wide association studies on 607 Mycobacterium tuberculosis clinical isolates with phenotypic drug susceptibility test data revealed that a K114N mutation on the rv2820c gene was highly enriched in capreomycin-resistant isolates (32/213, 15.02%).

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Although -aminosalicylic acid (PAS) has been used to treat tuberculosis for decades, mechanisms of resistance to this drug in () clinical isolates have not been thoroughly investigated. Previously, we found that decreased methylenetetrahydrofolate reductase (MTHFR) activity of Rv2172c led to increased sensitivity to antifolates in . In this study, we collected the genome-sequencing data of 173 PAS-resistant and 803 PAS-sensitive clinical isolates and analyzed mutations in those 976 isolates.

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Tuberculosis remains a serious challenge to human health worldwide. -Aminosalicylic acid (PAS) is an important anti-tuberculosis drug, which requires sequential activation by () dihydropteroate synthase and dihydrofolate synthase (DHFS, FolC). Previous studies showed that loss of function mutations of a thymidylate synthase coding gene caused PAS resistance in , but the mechanism is unclear.

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Although -aminosalicylic acid (PAS) has been used to treat tuberculosis agent for decades, its mechanisms of resistance are still not thoroughly understood. Previously, sporadic studies showed that certain mutations in the region caused PAS resistance in , but a comprehensive analysis is lacking. Recently, we found a G-10A mutation in in a PAS-resistant clinical isolate, but it did not cause PAS resistance.

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Escherichia coli serine hydroxymethyltransferase (GlyA) converts serine to glycine, and mutants are auxotrophic for glycine. CycA is a transporter that mediates glycine uptake. Deleting in E.

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Although glutathione (GSH) has been shown to influence the antimicrobial effects of many kinds of antibiotics, little is known about its role in relation to trimethoprim (TMP), a widely used antifolate. In this study, several genes related to glutathione metabolism were deleted in different Escherichia coli strains (i.e.

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Tuberculosis (TB), caused by Mycobacterium tuberculosis, is one of the most fatal diseases in the world. Methylenetetrahydrofolate reductase (MTHFR) catalyzes the production of 5-methyltetrahydrofolate (5-CH-THF), which is required for the biosynthesis of methionine in bacteria. Here, we identified Rv2172c as an MTHFR in M.

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Folates are required for the biosynthesis of purines, thymine, methionine, glycine, and pantothenic acid, key metabolites that bacterial cells cannot survive without. Sulfonamides, which inhibit bacterial folate biosynthesis and are generally considered as bacteriostats, have been extensively used as broad-spectrum antimicrobials for decades. Here we show that, deleting in and other bacterial species converted sulfamethoxazole from a bacteriostat into a bactericide.

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After several decades of use, trimethoprim (TMP) remains one of the key access antimicrobial drugs listed by the World Health Organization. To circumvent the problem of trimethoprim resistance worldwide, a better understanding of drug-resistance mechanisms is required. In this study, we screened the single-gene knockout library of , and identified and other several genes involved in trimethoprim resistance.

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Pyrazinamide (PZA) is widely used to treat drug-sensitive or multidrug resistance tuberculosis. However, conventional PZA susceptibility tests of clinical isolates are rather difficult because of the requirement of acid pH. Since resistance to pyrazinamide is primary mediated by mutation of , an alternative way of PZA susceptibility test is to analyze the pyrazinamidase activities of clinical isolates.

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Previous studies showed that mutation of folC caused decreased expression of the dihydropteroate synthase encoding gene folP2 in Mycobacterium tuberculosis (M. tuberculosis). We speculated that mutation of folC in M.

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Nicotinamide adenine dinucleotide (NAD) is an indispensable cofactor in all domains of life, and its homeostasis must be regulated tightly. Here we report that a Nudix-related transcriptional factor, designated MsNrtR (MSMEG_3198), controls the pathway of NADbiosynthesis in , a non-tuberculosis . The integrated evidence and confirms that MsNrtR is an auto-repressor, which negatively controls the NADbiosynthetic pathway.

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Mycobacterium tuberculosis (Mtb) manipulates multiple host defence pathways to survive and persist in host cells. Understanding Mtb-host cell interaction is crucial to develop an efficient means to control the disease. Here, we applied the Mtb proteome chip, through separately interacting with H37Ra and H37Rv stimulated macrophage lysates, screened 283 Mtb differential proteins.

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Although MgrB is established to be a feedback inhibitor of the PhoP/Q system in Escherichia coli, the biological functions of MgrB remain largely unknown. To explore new functions of MgrB, a comparative transcriptome analysis was performed (E. coli K-12 W3110 ΔmgrB vs E.

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Article Synopsis
  • Mycobacterium tuberculosis (Mtb) kinase PknG helps the bacteria survive inside macrophages, but its interactions with human proteins are not well understood.
  • This study used a HuProt array to identify 125 proteins that interact with PknG, including CypA, which was validated in different experiments.
  • PknG reduces CypA levels through phosphorylation, inhibiting inflammatory responses by downregulating key pathways, which ultimately helps Mtb survive in host cells.
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Owing to the spread of multidrug resistance (MDR) and extensive drug resistance (XDR), there is a pressing need to identify potential targets for the development of more-effective anti-M. tuberculosis (Mtb) drugs. PafA, as the sole Prokaryotic Ubiquitin-like Protein ligase in the Pup-proteasome System (PPS) of Mtb, is an attractive drug target.

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(Mtb) has evolved multiple strategies to counter the human immune system. The effectors of Mtb play important roles in the interactions with the host. However, because of the lack of highly efficient strategies, there are only a handful of known Mtb effectors, thus hampering our understanding of Mtb pathogenesis.

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MarR family proteins are transcriptional regulators that control expression of bacterial proteins involved in metabolism, virulence, stress responses and multi-drug resistance, mainly via ligand-mediated attenuation of DNA binding. Greater understanding of their underlying regulatory mechanism may open up new avenues for the effective treatment of bacterial infections. To gain molecular insight into the mechanism of Rv2887, a MarR family protein in M.

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Article Synopsis
  • Tuberculosis (TB) remains a leading infectious disease globally, with significant issues arising from drug resistance, particularly to Mycobacterium tuberculosis (M.tb).
  • Ethionamide (ETH) is a second-line anti-TB drug that faces challenges due to the development of ETH resistance, related to its activation by the enzyme Etha, which is repressed by the protein Ethr.
  • Research revealed that the molecule c-di-GMP interacts with Ethr, promoting its binding to the etha promoter and leading to increased resistance of M.tb to ETH, highlighting a new mechanism that could inform future drug development strategies.
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Although the folate biosynthesis pathway has been well studied in bacteria, little is known about its regulation. In the present study, the gene in was deleted. Subsequent drug susceptibility tests revealed that the Δ strain was more sensitive to -aminosalicylic acid (PAS) and sulfamethoxazole.

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(Mtb) is the causative agent of tuberculosis, the leading cause of death among all infectious diseases. There are 11 eukaryotic-like serine/threonine protein kinases (STPKs) in Mtb, which are thought to play pivotal roles in cell growth, signal transduction and pathogenesis. However, their underlying mechanisms of action remain largely uncharacterized.

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The genetic manipulation of genome is limited by the availability of selection markers. Spontaneous resistance mutation rate of to the widely used kanamycin is relatively high which often leads to some false positive transformants. Due to the few available markers, we have created a cassette containing thiostrepton resistance gene () for selection in and BCG, and gentamicin resistance gene () for and mc155, flanked with sequences recognized by the Xer system of mycobacteria.

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Co-trimoxazole, a fixed-dose combination of sulfamethoxazole (SMX) and trimethoprim (TMP), has been used for the treatment of bacterial infections since the 1960s. Since it has long been assumed that the synergistic effects between SMX and TMP are the consequence of targeting 2 different enzymes of bacterial folate biosynthesis, 2 genes ( and ) involved in the folate biosynthesis of were deleted, and their effects on the susceptibility to antifolates were tested. The results showed that the deletion of resulted in a lag of growth in minimal medium and increased susceptibility to both SMX and TMP.

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Synergies between sulfonamides and other antimicrobial agents have long been reported, but the reason still remains unclear. Previously, Vilchèze et al. found that, sulfamethoxazole (SMX) could potentiate the bacterialcidal activity of isoniazid (INH) and rifampin (RIF) in Mycobacterium tuberculosis.

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Nɛ-lysine acetylation is one of the most abundant post-translational modifications in eukaryote and prokaryote. Protein acetylome of Escherichia coli has been screened using mass spectrometry (MS) technology, and many acetylated proteins have been identified, including the pyridoxine 5'-phosphate oxidase (EcPNPOx), but the biological roles played by lysine acetylation in EcPNPOx still remain unknown. In this study, EcPNPOx was firstly overexpressed and purified, and two acetylated lysine residues were identified by the subsequent liquid chromatography-tandem mass spectrometry analysis.

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