Publications by authors named "JianSong Chen"

Article Synopsis
  • Early growth vigor in rice breeding is crucial for short-duration varieties, with shoot dry weight (SDW) being a key trait for improvement through molecular breeding.
  • A stable QTL for SDW, named qSDW-5, was identified, linking it to the gene LOC_Os05g09520, known to affect grain width and weight.
  • Haplotype analysis showed that most rice cultivars in southern China carry a specific haplotype that positively influences SDW, grain width, and weight, providing a genetic basis for breeding stronger early growth rice varieties.
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  • * A genome-wide association study identified 54 QTLs related to cooking quality traits like amylose content (AC), gel consistency (GC), and alkali spreading value (ASV) in a sample of 450 rice accessions across two environments.
  • * The study highlighted the OsRING315 gene, which affects both AC and GC, showing promise for genetic improvements; different haplotypes of this gene are linked to variations in these traits across rice types.
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  • Kraft lignin (KL) can be transformed into iminated lignin (IL) by adding primary amine lignin to salicylaldehyde, resulting in enhanced material properties.
  • The synthesis process was characterized through various analytical techniques, confirming a nitrogen content of 3.32% and significant antioxidant activity comparable to commercial antioxidants.
  • Iminated lignin (IL-6) demonstrated strong lead-ion adsorption capabilities, being 3.2 times more effective than KL, making it a valuable resource for eco-friendly materials.
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Multiple regulatory mechanisms are in place to ensure the normal processes of bone metabolism, encompassing both bone formation and absorption. This study has identified chaperone-mediated autophagy (CMA) as a critical regulator that safeguards bone formation from the detrimental effects of excessive inflammation. By silencing LAMP2A or HSCA8, we observed a hindrance in the osteoblast differentiation of human bone marrow mesenchymal stem cells (hBMSCs) in vitro.

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We describe a strategy that combines histologic and molecular mapping that permits interrogation of the chronology of changes associated with cancer development on a whole-organ scale. Using this approach, we present the sequence of alterations around RB1 in the development of bladder cancer. We show that RB1 is not involved in initial expansion of the preneoplastic clone.

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Multi-platform mutational, proteomic, and metabolomic spatial mapping was used on the whole-organ scale to identify the molecular evolution of bladder cancer from mucosal field effects. We identified complex proteomic and metabolomic dysregulations in microscopically normal areas of bladder mucosa adjacent to dysplasia and carcinoma . The mutational landscape developed in a background of complex defects of protein homeostasis which included dysregulated nucleocytoplasmic transport, splicesome, ribosome biogenesis, and peroxisome.

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  • Developing rice varieties with strong resistance to blast disease is crucial for effective and cost-efficient disease management.
  • This study identified 74 quantitative trait loci (QTLs) linked to resistance against both leaf and panicle blast using 414 diverse rice accessions.
  • The qPBR1 locus showed significant promise for breeding durable rice varieties, with candidate genes identified that do not negatively impact crop yield.
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  • Strong seedling vigor is crucial for rice establishment and competitiveness against weeds, with shoot length (SL) being a key trait, although few genes affecting SL have been cloned.
  • The study identified two important QTLs, qSL-1f and qSL-1d, with LOC_Os01g68500 and SD1 being the causal genes for SL, showing a positive correlation between SL and plant height (PH).
  • Knockout experiments revealed that SD1 has a more significant impact on PH, but both genes influence SL equally; their suitable haplotypes can improve traits essential for direct seeding rice breeding.
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Background: Previous models for predicting delirium after cardiac surgery remained inadequate. This study aimed to develop and validate a machine learning-based prediction model for postoperative delirium (POD) in cardiac valve surgery patients.

Methods: The electronic medical information of the cardiac surgical intensive care unit (CSICU) was extracted from a tertiary and major referral hospital in southern China over 1 year, from June 2019 to June 2020.

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Genome-wide association mapping revealed a novel QTL for shoot length across multiple environments. Its causal gene, LOC_Os01g68500, was identified firstly through gene-based haplotype analysis, gene expression and knockout transgenic verification. Strong seedling vigor is an important breeding target for rice varieties used in direct seeding.

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Persulfate is considered a convenient and efficient remediation agent for organic contaminated soil. However, the potential risk of sulfur into the soil remediation by persulfate remains ignored. In this study, glass bottles with different persulfate dosages and groundwater tables were set up to simulate persulfate remediation of organic pollutants (aniline).

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The potato cyst nematode () is an obligate root pathogen of potatoes. encodes several highly expanded effector gene families, including the family; however, little is known about the function of this effector family. We cloned four genes from (named ) that share high sequence similarity and are homologous to the and effector genes from the soybean cyst nematode ().

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Drought, which can induce osmotic stress, is the leading environmental constraint on crop productivity. Plants in both agricultural and natural settings have developed various mechanisms to cope with drought stress. The identification of genes associated with drought stress tolerance and understanding the underlying regulatory mechanisms are prerequisites for developing molecular manipulation strategies to address this issue.

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Cartilage damage affects millions of people worldwide. Tissue engineering strategies hold the promise to provide off-the-shelf cartilage analogs for tissue transplantation in cartilage repair. However, current strategies hardly generate sufficient grafts, as tissues cannot maintain size growth and cartilaginous phenotypes simultaneously.

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Objective: To explore the genetic etiology of a child with facial dysmorphia, developmental delay, intellectual disability, Fanconi renotubular syndrome, and Chiari malformations.

Materials And Methods: Whole exome sequencing (WES), Copy number variation sequencing (CNV-seq), and mitochondrial gene detection (Long-PCR + NGS) were applied to detect possible pathogenic mutations and chromosomal copy number variations (CNVs), together with databases and literature reviews to clarify the pathological significance of the candidate mutations.

Results: The WES revealed a 2.

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Grain chalkiness is the main factor determining the market value of rice. Reducing chalkiness is an important breeding goal for genetic improvement of high quality rice. Identification of QTLs or genes controlling chalkiness is the prerequisite for molecular breeding in rice.

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Spinal cord injury (SCI) and spinal cord tumor are devastating events causing structural and functional impairment of the spinal cord and resulting in high morbidity and mortality; these lead to a psychological burden and financial pressure on the patient. These spinal cord damages likely disrupt sensory, motor, and autonomic functions. Unfortunately, the optimal treatment of and spinal cord tumors is limited, and the molecular mechanisms underlying these disorders are unclear.

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Article Synopsis
  • The study analyzed 142 patients diagnosed with Richter transformation of diffuse large B-cell lymphoma (RT-DLBCL), focusing on morphological, immunophenotypic, and molecular characteristics.
  • Findings revealed that RT-DLBCL predominantly exhibited immunoblastic morphology with specific marker expressions, including high levels of CD19 and BCL2, while a significant portion displayed a non-germinal center B-cell immunophenotype.
  • Genetic analysis indicated notable chromosome alterations and common mutations involving TP53, with no significant difference in overall survival between different immunophenotypes, although CD5 expression appeared to correlate with overall survival outcomes.
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High-salinity and blast disease are two major stresses that cause dramatic yield loss in rice production. () have been reported to play important role in biotic and abiotic stresses in plants. However, the roles of remain unknown.

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Background: A pangenome aims to capture the complete genetic diversity within a species and reduce bias in genetic analysis inherent in using a single reference genome. However, the current linear format of most plant pangenomes limits the presentation of position information for novel sequences. Graph pangenomes have been developed to overcome this limitation.

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Isoprene is the most abundantly emitted biogenic volatile organic compound (BVOC), which plays an essential role in producing tropospheric ozone (O). However, the simulations of isoprene emissions have not been sufficiently verified over Yangtze River Delta (YRD), and few studies have specifically addressed its impact on O formation. In this study, we simulated the isoprene emissions in Zhejiang Province (ZJ), a region with the largest BVOC emission in YRD, in August 2020 using the Model of Emissions of Gases and Aerosols from Nature (MEGAN) and the latest Moderate Resolution Imaging Spectroradiometer (MODIS) products, and investigated its contributions to O using the Weather Research and Forecasting (WRF)-Community Multiscale Air Quality (CMAQ) model.

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Flowering time is an important agronomic trait affecting crop yield. FCS-LIKE ZINC FINGER (FLZ) proteins are plant-specific regulatory proteins that are involved in multiple biological processes. However, their roles in plant flowering time control have not been clarified.

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The development of eco-friendly, sustainable, biodegradable, and biocompatible green biopolymer composites is becoming increasingly important. In this study, acetoacetylated lignin (ATL) was obtained via an eco-friendly, facile one-step synthesis reaction, and chitosan (CS)-containing ATL films (CSL) were prepared. The chemical structural analysis of ATL confirmed that the acetoacetyl groups were successfully grafted onto kraft lignin (KL).

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Typical value-added platform chemicals 5-hydroxymethylfurfural (HMF) and levulinic acid (LA) can be obtained from hexoses under microwave hydrothermal (MHT) conditions. This study explored the detailed transformation process regarding the MHT products in acidic seawater obtained using glucose and fructose as raw materials. The facile conversion of fructose compared with glucose was mainly ascribed to their different activation energies (56.

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Autophagy, an intracellular degradation system conserved in eukaryotes, has been increasingly recognized as a key battlefield in plant-pathogen interactions. However, the role of plant autophagy in nematode parasitism is mostly unknown. We report here the identification of a novel and conserved effector, Nematode Manipulator of Autophagy System 1 (NMAS1), from plant-parasitic cyst nematodes (Heterodera and Globodera spp.

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