Publications by authors named "JianRen Ye"

Background: Pinus thunbergii is an economically important conifer species that plays a fundamental role in forest ecosystems. However, the population has declined dramatically in recent years as a result of the pine wilt disease outbreak. Thus, developing pine wilt-resistant P.

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Due to the rise in global temperatures with climate change, insects, as ectotherms, critically depend on their heat tolerance for survival and reproduction. Heat shock proteins (HSPs) are essential for heat tolerance by averting protein denaturation; however, whether HSPs contribute to reproduction-related heat tolerance remains largely unexplored. The study investigated the reproductive heat tolerance and recovery of Monochamus alternatus, a major forestry pest, in response to heat stress.

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Currently, almost all known regulators involved in bacterial phosphorus metabolism are proteins. In this study, we identified a conserved new small regulatory RNA (sRNA), named PhoS, encoded in the 3' untranslated region (UTR) of the phoPR genes in Bacillus velezensis and B. subtilis.

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The remarkable efficacy of COVID-19 vaccines has established mRNA as a highly promising biomedical technology. However, the adequate application of mRNA therapeutics necessitates additional measures to mitigate the inherent immunogenicity, which is predominantly caused by dsRNA. As a byproduct of the in vitro transcription of mRNA, dsRNA was reported to be originated through several distinct mechanisms, including the extension of 3' loop-back hairpins, the extension of hybridized abortive transcripts, and promoter-independent transcription.

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Article Synopsis
  • Pine wilt disease (PWD) is caused by a tiny worm called the pine wood nematode (PWN), and it harms pine forests around the world.
  • This study looks at how a type of pine tree in China fights against PWN, discovering many genes that change when the tree is infected.
  • The research found that certain chemical pathways in the tree help it defend itself by producing special substances and proteins to fight off the nematode.
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Background: Cell wall integrity (CWI) is crucial for fungal growth, pathogenesis, and adaptation to extracellular environments. Calcofluor white (CFW) is a cell wall perturbant that inhibits fungal growth, yet little is known about how phytopathogenic fungi respond to the CFW-induced stress.

Results: In this study, we unveiled a significant discovery that CFW triggered the translocation of the transcription factor CgCrzA from the cytoplasm to the nucleus in Colletotrichum gloeosporioides.

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Unlabelled: Pinewood nematodes (PWN, ) are destructive plant parasitic nematodes that cause pine wilt disease (PWD) by attacking the vascular systems of pine trees, resulting in widespread tree mortality. Research has shown that there are connections between nematode-associated microbes and PWD. Yet the variations in microbial communities across different geographic regions are not well-understood.

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Article Synopsis
  • Pine wilt disease (PWD) poses a significant threat to pine trees and results in major economic losses, highlighting the need for better understanding of its molecular mechanisms for effective prevention and treatment.
  • Researchers identified a key virulence effector, BxNMP1, that is expressed early during the infection and interacts with important proteins in pine trees, suggesting it plays a role in disease severity.
  • The study indicates that BxNMP1 not only regulates the pathogenicity of the disease but also interferes with the host's natural defense mechanisms, providing insights that might help in developing strategies for combating PWD.
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In this study, we focused on evaluating the impact of BHJ04 on the growth of seedlings and its biocontrol efficacy against pine wilt disease (PWD). Additionally, the colonization dynamics of BHJ04 on were examined. The growth promotion experiment showed that BHJ04 significantly promoted the growth of the branches and roots of .

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mRNA vaccines are entering a period of rapid development. However, their synthesis is still plagued by challenges related to mRNA impurities and fragments (incomplete mRNA). Most impurities of mRNA products transcribed in vitro are mRNA fragments.

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Bursaphelenchus xylophilus is the pathogen of pine wilt disease, which can devastate the pine forest ecosystem. Usually, plant cells generate reactive oxygen species (ROS) as a defensive substance or signalling molecules to resist the infection of nematodes. However, little is known about how B.

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Parl. is an economically and medicinally important plant, as well as a world-renowned horticultural species of the genus. Pine wilt disease is a dangerous condition that affects .

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Background: Global climate change is causing an increase in extreme high temperatures (EHTs), which subject insects to unprecedented stress. Behavior plasticity in response to EHTs, particularly oviposition behavior, is important for the persistence and outbreak of insect populations. Investigating the plasticity of oviposition behavior and its underlying mechanisms has theoretical importance to pest management, but knowledge gaps still remain.

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Introduction: Circular RNAs (circRNAs) are endogenous noncoding RNAs (ncRNAs) with transcriptional lengths ranging from hundreds to thousands. circRNAs have attracted attention owing to their stable structure and ability to treat complicated diseases. Our objective was to create a one-step reaction for circRNA synthesis using wild-type T7 RNA polymerase as the catalyst.

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Approximately one-third of agricultural land worldwide is affected by salinity, which limits the productivity and sustainability of crop ecosystems. Plant-growth-promoting rhizobacteria (PGPR) are a potential solution to this problem, as PGPR increases crop yield through improving soil fertility and stress resistance. Previous studies have shown that ZS-3(ZS-3) can effectively help plants tolerate salinity stress.

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Pine wilt disease (PWD) is a devastating disease that threatens pine forests worldwide, and breeding resistant pines is an important management strategy used to reduce its impact. A batch of resistant seeds of was introduced from Japan. Based on the resistant materials, we obtained somatic plants through somatic embryogenesis.

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Lipase is involved in lipid hydrolysis, which is related to nematodes' energy reserves and stress resistance. However, the role of lipases in Bursaphelenchus xylophilus, a notorious plant-parasitic nematode responsible for severe damage to pine forest ecosystems, remains largely obscure. Here, we characterized a class III lipase as a candidate effector and named it BxLip-3.

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Introduction: Pine wilt disease () was recently detected in Liaoning Province, which was previously considered an unfavourable area for due to its low temperatures. This study aims to compare the reproductivity and genetic variations of isolates from Liaoning Province and other parts of China to explore their phenotypic and genomic differences.

Methods: The samples from Liaoning, Anhui, Hubei, Henan, Zhejiang and Jiangsu were isolated and purified to obtain the strains.

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Selecting suitable promoters to drive gene overexpression can provide significant insight into the development of engineered bacteria. In this study, we analyzed the transcriptome data of JK-SH007 and identified 54 highly expressed genes. The promoter sequences were located using genome-wide data and scored using the prokaryotic promoter prediction software BPROM to further screen out 18 promoter sequences.

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Pine wilt disease, caused by the pine wood nematode (PWN, ), is a major quarantine forest disease that poses a threat to various pine species, including (masson pine), worldwide. Breeding of PWN-resistant pine trees is an important approach to prevent the disease. To expedite the production of PWN-resistant accessions, we investigated the effects of maturation medium treatments on somatic embryo development, germination, survival, and rooting.

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Article Synopsis
  • JK-SH007 is effective at controlling poplar canker caused by fungi, with its antifungal mechanism linked to the protein CysB.
  • CysB is crucial for synthesizing cysteine and the siderophore ornibactin, and its absence reduces antifungal activity, which can be restored by adding cysteine.
  • Transcriptome analysis reveals that CysB influences the expression of genes in the iron-sulfur metabolic pathway, suggesting a connection between this pathway and the antifungal properties of JK-SH007.
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Potassium feldspar (KO·AlO·6SiO) is considered to be the most important source of potash fertilizer. The use of microorganisms to dissolve potassium feldspar is a low-cost and environmentally friendly method. Priestia aryabhattai SK1-7 is a strain with a strong ability to dissolve potassium feldspar; it showed a faster pH drop and produced more acid in the medium with potassium feldspar as the insoluble potassium source than in the medium with KHPO as the soluble potassium source.

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Objective: There is a growing need for nematode resistant Pinaceae species plantlets to cope with the global scale degradation of coniferous forests, due to the prevalence of pine wilt disease. One of the bottlenecks that limits the commercialization of Pinaceae species plantlets is regeneration following their transfer from controlled sterile environments to the field while maintaining high survival rates.

Methods: The growth factors of somatic plantlets (SPs), such as sucrose, media, culture substrate, brassinolide and spectrum were investigated to promote the application of somatic nematode-resistant P.

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The objective of this work was to develop an efficient approach for chemoenzymatically transforming biomass to furfurylamine by bridging chemocatalysis and biocatalysis in a deep eutectic solvent of EaCl:Gly-water. Using hydroxyapatite (HAP) as support, heterogeneous catalyst SO /SnO-HAP was synthesized for transforming lignocellulosic biomass into furfural using organic acid as a co-catalyst. The turnover frequency (TOF) was correlated with the pKa value of the used organic acid.

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Article Synopsis
  • - Pine wilt disease, caused by a specific pathogen, leads to significant economic losses in conifer production by hindering host immune responses through effector proteins.
  • - The study identifies two new effector proteins, BxKU1 and BxKU2, that employ different strategies to suppress plant immunity; they differ in structure, expression patterns, and their effects on host reproduction and feeding rates when silenced.
  • - Both effectors were found to interact with a specific protein (TLP4) in the host, revealing a complex immune evasion strategy that enhances our understanding of plant-pathogen interactions.
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