Publications by authors named "Ji-yan Shi"

The biogeochemical cycle of sulfur can directly affect the speciation transformation of heavy metals in soils and their accumulation in plants. The toxicity of heavy metals in plants can be alleviated by their complexation with sulfur compounds like phytochelatins or metallothiones, consisting of the major mechanisms of phytodetoxification. Sulfur deficiency is becoming one of the limiting factors that influence Chinese agricultural production.

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As one type of the persistent organic pollutants, polychlorinated biphenyls (PCBs) are tremendously harmful to organisms. These compounds are easily absorbed onto soil particles and able to accumulate in soil after they are released into the environment. Bioremediation technology of PCBs-contaminated soils has become a research hotspot in recent years, and immobilized microorganism technique has high developing and applying value because of its unique advantages in environmental remediation.

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Contamination of soils by lead (Pb) is of widespread occurrence because of the industrialization, urbanization, mining, and many other anthropogenic activities. It is urgent and necessary for scientists to uncover the mechanisms of uptake, translocation, accumulation and detoxification of Pb in plants for the following two reasons. First, it helps target and regulate the key process of Pb uptake by crops and vegetables and minimize the threat of Pb introduction to the food chain.

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Phytolacca americana L. (P. americana) is a manganese (Mn) hyperaccumulator plant discovered in southern China, and knowledge of Mn uptake characteristics and mechanisms on this plant may provide essential and critical information for phytoremediation.

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The restoration of submerged macrophytes is the key to remediate eutrophic water and maintain the health of aquatic ecosystem, while light is the main limiting factor. This paper summarized the factors affecting the light extinction in water and the mechanisms of light intensity affecting the physiology of submerged macrophytes, with the focuses on the metabolic mechanisms of carbon, nitrogen, and phosphorus, the responses of antioxidant enzyme system, and the feedbacks of pigment composition and concentration in the common submerged macrophytes under low light stress. Several engineering techniques applied in the ecological restoration of submerged macrophytes were presented, and the framework of the restoration of submerged macrophytes in eutrophic water was proposed.

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The rapid development of nanotechnology and the potential environmental risk of wide application of artificial nanoparticles (NPs) have raised considerable concerns. Metal-based nanoparticles (MB NPs) have dual-toxicity of metal and NPs, and thus, their bio-toxicity and ecological risk are the hotspots in the studies of nanotoxicology. Plant, as a main component of ecosystem, is a potential pathway for NPs bioaccumulation and entering into food chain.

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Solid state phosphorous is an important phosphorus speciation controlling the phosphorous bioavailability and mobility in the environment. Synchrotron-based X-ray absorption near-edge structure (XANES) spectroscopy, with its unique advantage of being a non-destructive method in identifying the local chemical information of target element at molecular level in situ, has become one of the frontier technologies for characterizing the speciation of chemical substances and clarifying the microscopic mechanisms of chemical reactions, attracting extensive attention in the field of environmental chemistry. This paper briefly introduced the basic theory of phosphorus XANES spectroscopy, summarized the applications of XANES spectroscopy in the researches of solid state phosphorus speciation in minerals, soils, and organic fertilizers, and analyzed the challenges and prospects of the applications of XANES spectroscopy in identifying the solid state phosphorus speciation in the environmental samples.

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To explore rhizosphere effects, geographical differences and their effects on the bacterial community associated with the geoherb Fritillaria thunbergii, some physicochemical properties of soil samples (3 sampling sites × 2 habitats (rhizosphere and bulk soil)) were measured and the soil bacterial community detected by PCR-denaturing gradient gel electrophoresis (DGGE). Among the three regions, soil pH varied between 4.48 and 7.

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The role of sulfur on the availability of Cu and the bacterial community in rice rhizospheres was investigated by pot experiments. With sulfur addition, pH in rhizosphere soil decreased and Mg(NO₃)₂ extractable Cu increased significantly. The bacterial community composition also changed with sulfur addition.

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A pot experiment was conducted to study the microbial activity and community structure in a lead-polluted paddy soil under effects of amendment with different concentration sodium thiosulfate. The amendment of the sulfur-containing substrate increased the soil oxidation-reduction potential and respiration rate, promoted the growth of soil sulfur-oxidizing bacteria, and induced some changes in soil microbial community structure. The clone sequencing indicated that the specific bands of soil microbes in sodium thiosulfate treatments had very high similarity to Bateroidetes, Thiobacillus, beta-proteobacteria, and Acidobacteria.

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The present study was conducted to determine the abilities of the living and nonliving Pseudomonas putida CZ1 cells, clays (goethite, kaolinite, smectite and manganite) and their composites to accumulate copper and zinc from a liquid medium, and elucidate the role of microbes on the mobility of heavy metals. Various mixtures of bacteria and clays were exposed to solutions of 0.025 mM or 0.

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All the regulations that define a maximum concentration of metals in the receiving soil are based on total soil metal concentration. However, the potential toxicity of a heavy metal in the soil depends on its speciation and availability. We studied the effects of heavy metal speciation and availability on soil microorganism activities along a Cu/Zn contamination gradient.

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Bacterial-mineral composites are important in the retention of heavy metals due to their large sorption capacity under a wide range of environmental conditions. This study provides the first quantitative comparison of the metal-binding capacities of P. putida CZ1-goethite composite to its individual components.

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Phytolacca acinosa Roxb. (P. acinosa) is a recently discovered manganese hyperaccumulator plant from southern China.

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Bioremoval of trimethylamine (TMA) in two three-stage biofilters packed with compost (A) and sludge (B), respectively, was investigated. Both biofilters were operated with an influent TMA concentration of 19.2-57.

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Previously performed studies have shown that Pseudomonas putida CZ1 biomass can bind an appreciable amount of Cu(II) and Zn(II) ions from aqueous solutions. The mechanisms of Cu- and Zn-binding by P. putida CZ1 were ascertained by chemical modifications of the biomass followed by Fourier transform infrared and X-ray absorption spectroscopic analyses of the living or nonliving cells.

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The adsorption and desorption processes of Cu(II) and Zn(II) on the biomass of Pseudomonas putida CZ1 as a function of particle concentrations (C(p)) were studied. In a 0.01 M KNO3 solution, the Cu-biomass and Zn-biomass adsorption systems displayed a clear C(p) effect.

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The environmental risk of heavy metal pollution is pronounced in soils adjacent to large industrial complexes. It is important to investigate the functioning of soil microorganisms in ecosystems exposed to long-term contamination by heavy metals. We studied the potential effects of heavy metals on microbial biomass, activity, and community composition in soil near a copper smelter in China.

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A strain of Pseudomonas sp. CZ1, which was isolated from the rhizosphere of Elsholtzia splendens obtained from the heavy-metal-contaminated soil in the north-central region of the Zhejiang province of China, has been studied for tolerance to copper (Cu) and zinc (Zn) and its capacities for biosorption of these metals. Based on 16S ribosomal DNA sequencing, the microorganism was closely related to Pseudomonas putida.

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To study Pseudomonas putida CZ1, having high tolerance to copper and zinc on the removal of toxic metals from aqueous solutions, the biosorption of Cu(II) and Zn(II) by living and nonliving P. putida CZ1 were studied as functions of reaction time, initial pH of the solution and metal concentration. It was found that the optimum pH for Zn(II) removal by living and nonliving cells was 5.

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