Modelling and measuring complexity of traditional and ancient technologies using Petri nets.

Technologies and their production systems are used by archaeologists and anthropologists to study complexity of socio-technical systems. However, there are several issues that hamper agreement about what constitutes complexity and how we can systematically compare the complexity of production systems. In this work, we propose a novel approach to assess the behavioural and structural complexity of production systems using Petri nets.

Modeling biological gradient formation: combining partial differential equations and Petri nets.

Both Petri nets and differential equations are important modeling tools for biological processes. In this paper we demonstrate how these two modeling techniques can be combined to describe biological gradient formation. Parameters derived from partial differential equation describing the process of gradient formation are incorporated in an abstract Petri net model.

Modeling innate immune response to early Mycobacterium infection.

In the study of complex patterns in biology, mathematical and computational models are emerging as important tools. In addition to experimental approaches, these modeling tools have recently been applied to address open questions regarding host-pathogen interaction dynamics, including the immune response to mycobacterial infection and tuberculous granuloma formation. We present an approach in which a computational model represents the interaction of the Mycobacterium infection with the innate immune system in zebrafish at a high level of abstraction.