Publications by authors named "Jessica A Bonzo"

Article Synopsis
  • Human liver-derived HepaRG cells were used in both 2D and 3D formats to assess mutagenesis by exposing them to the chemical N-nitrosodimethylamine (NDMA) for 72 hours.
  • The study measured cytotoxicity, DNA damage, micronucleus formation, and mutation frequency, finding that the 3D spheroids responded more significantly than the 2D cells.
  • NDMA primarily caused A:T → G:C transitions in mutations, suggesting that the HepaRG models could serve as effective tools for genotoxicity testing, but caution is needed regarding cytotoxic concentration levels.
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  • * The workshop aimed to identify opportunities for standardizing MPS and finding pathways for their use in regulatory decision-making, involving representatives from the FDA and 26 global regulatory organizations.
  • * Participants agreed that while developing specific standards for every context may be challenging, creating broadly applicable standards could be a more feasible approach to enhance the acceptance of CIVM/MPS in regulatory frameworks.
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HNF4α, a member of the nuclear receptor superfamily, regulates the genes involved in lipid and glucose metabolism. The expression of the gene in the liver of HNF4α knock-out mice was higher versus wildtype controls, whereas oppositely, promoter activity was 50% reduced by the overexpression of HNF4α in HepG2 cells, and treatment with retinoic acid (RA), a major metabolite of vitamin A, increased promoter activity 15-fold. The human promoter contains two DR5 and one DR8 binding motifs, as RA response elements (RARE) proximal to the transcription start site.

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  • * The study evaluates suspect screening analysis (SSA) using high-resolution liquid-chromatography mass-spectrometry (LCMS) to identify metabolites of various chemicals, including pharmaceuticals and agrochemicals from the EPA’s ToxCast library.
  • * An analysis workflow was developed, leading to the identification of known metabolites from haloperidol, demonstrating the effectiveness of the method in analyzing the metabolic profiles of selected xenobiotics.
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In vitro genotoxicity testing plays an important role in chemical risk assessment. The human B-lymphoblastoid cell line TK6 is widely used as a standard cell line for regulatory safety evaluations. Like many other mammalian cell lines, TK6 cells have limited metabolic capacity; therefore, usually require a source of exogenous metabolic activation for use in genotoxicity testing.

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Article Synopsis
  • * Researchers examined differentiated HepaRG cells, which represent liver functions, measuring the expression of 93 gene transcripts in response to 1060 chemicals over multiple concentrations.
  • * Using a Bayesian framework, the study modeled how these chemicals affected gene expression through six key transcription factors, offering insights into the molecular signaling pathways relevant for toxicology in human liver cells.
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  • Research on caloric restriction may reveal new therapies to reduce inflammation.
  • PPARα, a nuclear receptor, promotes fat utilization during fasting and activates the Gm15441 gene, which inhibits the production of a pro-inflammatory factor (TXNIP).
  • Experiments with Gm15441-null mice indicate that this gene plays a crucial role in reducing inflammation related to fasting and PPARα activation by suppressing NLRP3 inflammasome activation.
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  • * While traditional methods are effective at predicting clinical outcomes, there's a push for improved methodologies, especially with the advent of New Approach Methodologies (NAMs) that are being increasingly integrated into drug development.
  • * The FDA/CDER acknowledges both the opportunities and challenges that NAMs bring to regulatory processes and encourages dialogue with stakeholders to enhance testing methods and potentially speed up drug development.
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Na/H exchanger isoform 3 (NHE3) plays a key role in coupled electroneutral NaCl absorption in the mammalian intestine. Reduced NHE3 expression or function has been implicated in the pathogenesis of diarrhea associated with inflammatory bowel disease (IBD) or enteric infections. Our previous studies revealed transcriptional regulation of NHE3 by various agents such as TNF-α, IFN-γ, and butyrate involving transcription factors Sp1 and Sp3.

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Peroxisome proliferator-activated receptor-α (PPARA) is a nuclear transcription factor and key mediator of systemic lipid metabolism. Prolonged activation in rodents causes hepatocyte proliferation and hepatocellular carcinoma. Little is known about the contribution of nonparenchymal cells (NPCs) to PPARA-mediated cell proliferation.

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Peroxisome proliferator-activated receptor-α (PPARα) mediates metabolic remodeling, resulting in enhanced mitochondrial and peroxisomal β-oxidation of fatty acids. In addition to the physiological stimuli of fasting and high-fat diet, PPARα is activated by the fibrate class of drugs for the treatment of dyslipidemia. Sirtuin 1 (SIRT1), an important regulator of energy homeostasis, was downregulated in fibrate-treated wild-type mice, suggesting PPARα regulation of Sirt1 gene expression.

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High mobility group nucleosome-binding protein 5 (HMGN5) is a chromatin architectural protein that binds specifically to nucleosomes and reduces the compaction of the chromatin fiber. The protein is present in most vertebrate tissues however the physiological function of this protein is unknown. To examine the function of HMGN5 in vivo, mice lacking the nucleosome-binding domain of HMGN5 were generated and characterized.

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The critical importance of glutathione in mitigating the deleterious effects of electrophile generating drugs such as acetaminophen (APAP) is well established. However, the role of other antioxidant systems, such as that provided by thioredoxin, has not been extensively studied. Selenoprotein thioredoxin reductase 1 (Txnrd1) is important for attenuating activation of the apoptosis signaling-regulating kinase 1 (ASK1) and the c-Jun N-terminal kinase (JNK) pathway caused by high doses of APAP.

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Development of methods for rapid screening and stratification of subjects after exposure is an integral part of countermeasures against radiation. The potential demographic and exposure history-related heterogeneity of exposed populations warrants robust biomarkers that withstand and reflect such differences. In this study, the effect of aging and repeated exposure on the metabolic response to sublethal irradiation was examined in mice using UPLC-ESI-QTOF mass spectrometry.

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Global metabolomics analysis has the potential to uncover novel metabolic pathways that are differentially regulated during carcinogenesis, aiding in biomarker discovery for early diagnosis and remission monitoring. Metabolomics studies with human samples can be problematic due to high inter-individual variation; however xenografts of human cancers in mice offer a well-controlled model system. Urine was collected from a xenograft mouse model of MCF-7 breast cancer and analyzed by mass spectrometry-based metabolomics to identify metabolites associated with cancer progression.

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  • The pregnane X receptor (PXR) is thought to be involved in the metabolism of α-tocopherol, but confirming its role in humans has proven challenging.
  • Mouse models (hPXR, wild-type, and Pxr-null) were used to investigate how α-tocopherol metabolism varies by PXR function across species.
  • Findings showed that while α-tocopherol activates mouse PXR and induces Cyp3a expression, it also affects Cyp2c gene regulation in a PXR-independent manner, revealing a complex interaction between α-tocopherol and PXR.
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Hepatocyte nuclear factor 4α (HNF4α) regulates genes involved in lipid and bile acid synthesis, gluconeogenesis, amino acid metabolism, and blood coagulation. In addition to its metabolic role, HNF4α is critical for hepatocyte differentiation, and loss of HNF4α is associated with hepatocellular carcinoma. The hepatocyte-specific Hnf4a knock-out mouse develops severe hepatomegaly and steatosis resulting in premature death, thereby limiting studies of the role of this transcription factor in the adult animal.

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Early growth response 1 (Egr-1) protein is a critical regulator of genes contributing to liver fibrosis; however, little is known about the upstream transcriptional factors that control its expression. Here we show that Egr-1 expression is tightly regulated by nuclear receptor signaling. Hepatocyte nuclear factor 4α (HNF4α) activated the Egr-1 promoter through three DR1 response elements as identified by trans-activation assays.

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  • The study examined urinary metabolomes of rhesus macaques to better understand the metabolic indicators of type 2 diabetes mellitus (T2DM) and its progression.
  • Using advanced chromatography and mass spectrometry, researchers analyzed urine samples from normal and diabetic monkeys, achieving a high classification accuracy with a misclassification error of less than 5%.
  • Significant increases in specific metabolites (like glucose and glycine betaine) were found in T2DM monkeys, linked to impaired kidney function due to reduced mRNA levels of a crucial transporter, which was also validated in a mouse model.
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  • * Researchers overexpressed HNF4α in hepatocyte cells and analyzed gene expression, discovering that it directly represses key genes responsible for the epithelial-to-mesenchymal transition (EMT).
  • * The findings suggest that HNF4α not only supports hepatocyte identity but also prevents the activation of the mesenchymal gene program, highlighting its dual role as both an activator of differentiation and a repressor of EMT genes.
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Mutations in the HNF1A gene cause maturity-onset diabetes of the young type 3, one of the most common genetic causes of non-insulin-dependent (type 2) diabetes mellitus. Although the whole-body Hnf1a-null mouse recapitulates the low insulin levels and high blood glucose observed in human maturity-onset diabetes of the young type 3 patients, these mice also suffer from Laron dwarfism and aminoaciduria, suggesting a role for hepatocyte nuclear factor 1α (Hnf1α) in pathophysiologies distinct from non-insulin-dependent (type 2) diabetes mellitus. In an effort to identify pathways associated with inactivation of Hnf1α, an ultraperformance liquid chromatography coupled to mass spectrometry-based metabolomics study was conducted on urine samples from wild-type and Hnf1a-null mice.

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The 9 UDP-glucuronosyltranferases (UGTs) encoded by the UGT1 locus in humans are key enzymes in the metabolism of most drugs as well as endogenous substances such as bile acids, fatty acids, steroids, hormones, neurotransmitters, and bilirubin. Severe unconjugated hyperbilirubinemia in humans that suffer from Crigler-Najjar type I disease results from lesions in the UGT1A1 gene and is often fatal. To examine the physiological importance of the Ugt1 locus in mice, this locus was rendered non-functional by interrupting exon 4 to create Ugt1(-/-) mice.

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Article Synopsis
  • * It binds to the Ah receptor but doesn’t activate it in the same way as the classic inducer, TCDD, due to differences in receptor activity and degradation.
  • * Although chrysin shows potential as a unique agonist at the molecular level, it fails to increase UGT1A1 expression in living transgenic mice, raising doubts about its effectiveness in clinical applications for regulating liver metabolism.
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  • The human UGT1A genes are regulated differently across various tissues, and a study using transgenic mice (Tg-UGT1) showed that the expression patterns of these genes are similar to those found in humans.
  • The study identified specific UGT1A genes (UGT1A1, UGT1A3, UGT1A4, UGT1A6) as targets of the PPAR alpha receptor, with oral administration of the PPARalpha agonist pirinixic acid leading to increased protein levels in tissues like the liver and gastrointestinal tract.
  • The findings suggest that treatment with fibrates in humans could enhance the function of the UGT1A family proteins, impacting bile acid processing and
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Glucuronidation, an important bile acid detoxification pathway, is catalyzed by enzymes belonging to the UDP-glucuronosyltransferase (UGT) family. Among UGT enzymes, UGT1A3 is considered the major human enzyme for the hepatic C24-glucuronidation of the primary chenodeoxycholic (CDCA) and secondary lithocholic (LCA) bile acids. We identify UGT1A3 as a positively regulated target gene of the oxysterol-activated nuclear receptor liver X-receptor alpha (LXRalpha).

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