Bellybutton: accessible and customizable deep-learning image segmentation.

The conversion of raw images into quantifiable data can be a major hurdle and time-sink in experimental research, and typically involves identifying region(s) of interest, a process known as segmentation. Machine learning tools for image segmentation are often specific to a set of tasks, such as tracking cells, or require substantial compute or coding knowledge to train and use. Here we introduce an easy-to-use (no coding required), image segmentation method, using a 15-layer convolutional neural network that can be trained on a laptop: Bellybutton.

Twist and measure: characterizing the effective radius of strings and bundles under twisting contraction.

We test the standard model for the length contraction of a bundle of strings under twist, and find deviation that is significantly greater than typically appreciated and that has a different nature at medium and large twist angles. By including volume conservation, we achieve better fits to data for single-, double-, and triple-stranded bundles of nylon monofilament as an ideal test case. This gives a well-defined procedure for extracting an effective twist radius that characterizes contraction behavior.