Publications by authors named "Jarret R"

Article Synopsis
  • - Generated a comprehensive genetic assembly for 27 distinct
  • Citrullus
  • genotypes, expanding the previous reference genome by adding significant DNA and thousands of genes, showcasing enhanced genetic diversity.
  • - Conducted comparative analysis revealing gene variants and structural changes, contributing to the understanding of watermelon evolution and traits like sweetness and bitterness, while also impacting disease resistance.
  • - Successfully integrated disease-resistant genes from wild species (
  • Citrullus amarus
  • and
  • Citrullus mucosospermus
  • ) into cultivated watermelon (
  • Citrullus lanatus
  • ), providing new insights into watermelon genetics and potential for genetic improvement.
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Capsiate is a key ingredient in the fruits of a nonpungent cultivar of . We investigated the effects of a extract (CE) and a capsiate-rich fraction of CE (CR) on nuclear receptors involved in multiple signaling pathways, glucose uptake, and adipogenesis in comparison to pure capsiate (Ca). Similar to the effect of Ca (100 μM), CE (500 μg/mL) and CR (100 μg/mL) caused the activation of PPARα and PPARγ (>3-fold), while CR also activated LXR and NRF2 (>2 fold).

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Pepper (Capsicum spp.) is one of the earliest cultivated crops and includes five domesticated species, C. annuum var.

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Sweetpotato (Ipomoea batatas (L.) Lam.) is one of the most important root crops cultivated worldwide.

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The origin of sweetpotato, a hexaploid species, is poorly understood, partly because the identity of its tetraploid progenitor remains unknown. In this study, we identify, describe and characterize a new species of Ipomoea that is sweetpotato's closest tetraploid relative known to date and probably a direct descendant of its tetraploid progenitor. We integrate morphological, phylogenetic, and genomic analyses of herbarium and germplasm accessions of the hexaploid sweetpotato, its closest known diploid relative Ipomoea trifida, and various tetraploid plants closely related to them from across the American continent.

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The sweetpotato collection housed by the International Center of Potato (CIP) is one of the largest assemblages of plant material representing the genetic resources of this important staple crop. The collection currently contains almost 6,000 accessions of (cultivated sweetpotato) and over 1,000 accessions of sweetpotato crop wild relatives (CWRs). In this study, the entire cultivated collection (5,979 accessions) was genotyped with a panel of 20 simple sequence repeat (SSR) markers to assess genetic identity, diversity, and population structure.

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Fruit characteristics of sweet watermelon are largely the result of human selection. Here we report an improved watermelon reference genome and whole-genome resequencing of 414 accessions representing all extant species in the Citrullus genus. Population genomic analyses reveal the evolutionary history of Citrullus, suggesting independent evolutions in Citrullus amarus and the lineage containing Citrullus lanatus and Citrullus mucosospermus.

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The discovery of the insertion of IbT-DNA1 and IbT-DNA2 into the cultivated (hexaploid) sweetpotato [Ipomoea batatas (L.) Lam.] genome constitutes a clear example of an ancient event of Horizontal Gene Transfer (HGT).

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Members of the highly polyphagous Bemisia tabaci (Gennadius) (Hemiptera: Aleyrodidae) species complex cause major crop damage by feeding and by transmitting plant viruses. The Middle East-Asia Minor 1 (MEAM1) of the B. tabaci complex is by far the most problematic whitefly affecting crops including cultivated watermelon (Citrullus lanatus; Cucurbitaceae: Cucurbitales).

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Years of selection for desirable fruit quality traits in dessert watermelon (Citrullus lanatus) has resulted in a narrow genetic base in modern cultivars. Development of novel genomic and genetic resources offers great potential to expand genetic diversity and improve important traits in watermelon. Here, we report a high-quality genome sequence of watermelon cultivar 'Charleston Gray', a principal American dessert watermelon, to complement the existing reference genome from '97103', an East Asian cultivar.

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Sweetpotato () plays a critical role in food security and is the most important root crop worldwide following potatoes and cassava. In the United States (US), it is valued at over $700 million USD. There are two sweetpotato germplasm collections (Plant Genetic Resources Conservation Unit and US Vegetable Laboratory) maintained by the USDA, ARS for sweetpotato crop improvement.

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Background: Storage roots are an ecologically and agriculturally important plant trait that have evolved numerous times in angiosperms. Storage roots primarily function to store carbohydrates underground as reserves for perennial species. In morning glories, storage roots are well characterized in the crop species sweetpotato, where starch accumulates in storage roots.

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Article Synopsis
  • Crop wild relatives of sweetpotato have valuable traits for breeding, but challenges like species classification and limited germplasm access hinder their use.
  • Researchers compiled geographic data on these wild relatives and assessed germplasm collections, finding that many species are underrepresented and could enhance crop traits.
  • Prioritizing collection efforts and improving conservation methods is essential for better utilization of these genetic resources in sweetpotato breeding.
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Agrobacterium rhizogenes and Agrobacterium tumefaciens are plant pathogenic bacteria capable of transferring DNA fragments [transfer DNA (T-DNA)] bearing functional genes into the host plant genome. This naturally occurring mechanism has been adapted by plant biotechnologists to develop genetically modified crops that today are grown on more than 10% of the world's arable land, although their use can result in considerable controversy. While assembling small interfering RNAs, or siRNAs, of sweet potato plants for metagenomic analysis, sequences homologous to T-DNA sequences from Agrobacterium spp.

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Article Synopsis
  • Morning glories, particularly the genus Ipomoea, are not monophyletic, indicating that multiple genera evolved from it, which has led to focused systematic research on the monophyletic tribe Ipomoeeae consisting of 650-900 species.
  • The study sequenced whole plastomes from 29 morning glory species and used that data to estimate phylogenetic relationships and divergence times, alongside analyzing traits like root architecture and flower color.
  • The findings confirm strong support for phylogenetic relationships among Ipomoeeae, suggest a late Eocene divergence, and reveal that the common ancestor had unique traits, contributing valuable insight into the evolution and ecology of morning glories.
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Intact seed of 475 genebank accessions of Citrullus ( C. lanatus var. lanatus and C.

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The United States Department of Agriculture-Agricultural Research Service sweetpotato (Ipomoea batatas) germplasm collection contains accessions that were initially collected from various countries worldwide. These materials have been maintained and distributed as in vitro plantlets since the mid-1980s. The status of viral infection by the emerging Sweet potato leaf curl virus (SPLCV) and other Begomovirus spp.

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Approximately 1100 genebank accessions of okra (Abelmoschus esculentus) and 540 additional accessions that included six of its related species-A. caillei, A. crinitis, A.

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Article Synopsis
  • Elevated levels of heavy metals in edible plants can pose health risks to consumers, prompting the study of 63 pepper genotypes of Capsicum chinense grown in contaminated soil.
  • The research aimed to measure the concentrations of Cd, Cr, Ni, Pb, Zn, Cu, and Mo in both the soil and mature pepper fruits and classify the genotypes as low or high accumulators of these metals.
  • Significant findings included high Cd and Pb concentrations in specific accessions, indicating that some pepper varieties could be suitable for phytoremediation, while others may prevent heavy metal exposure when grown in contaminated environments.
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The main objective of this investigation was to evaluate fruits of C. chinense accessions for their concentration of beta -carotene, ascorbic acid, and phenols for use as parents in breeding for these phytochemicals. Mature fruits of 63 accessions of C.

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Capsicum fruits contain a newly discovered phytochemical called capsinoids. Because little is known about the quantities of these compounds in both sweet and pungent pepper fruits, a high-performance liquid chromatography (HPLC) method was developed to identify and quantify the capsinoids (naturally present E-capsiate and dihydrocapsiate) utilizing fruit obtained from a variety of Capsicum spp. in the U.

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Variability in the concentrations of the chemical constituents that contribute to fruit flavor in Capsicum chinense is poorly documented in the scientific literature. We surveyed fruit of 216 landraces and cultivated varieties of Capsicum chinense acquired from North, Central, and South America, and analyzed these for concentrations of the simple sugars sucrose, glucose, and fructose, and citric, malic, succinic, fumaric, and ascorbic acids. Concentrations (mg/100 g Fresh Weight (FW) of whole fruit) of sucrose, glucose, and fructose in fruit of this species ranged from 0.

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Fruits of 63 accessions of Capsicum chinense Jacq. from the USDA/ARS Capsicum germplasm collection were analyzed for two major capsaicinoids, capsaicin and dihydrocapsaicin, using gas chromatography with nitrogen phosphorus detection (GC/NPD). The objectives of the present investigation were: (i) to quantify the major capsaicinoids (capsaicin and dihydrocapsaicin) in fruits of Capsicum chinense accessions and (ii) to identify accessions containing great concentrations of capsaicinoids among countries of hot pepper origin.

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The U.S. Department of Agriculture (USDA) pepper (Capsicum spp.

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Ninety Capsicum accessions selected from the USDA Capsicum germplasm collection were screened for their capsaicinoids content using gas hromatography with nitrogen phosphorus detection (GC/NPD). Fresh fruits of Capsicum chinense, C. frutescens, C.

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