Diffeomorphic Counterfactuals With Generative Models.

Counterfactuals can explain classification decisions of neural networks in a human interpretable way. We propose a simple but effective method to generate such counterfactuals. More specifically, we perform a suitable diffeomorphic coordinate transformation and then perform gradient ascent in these coordinates to find counterfactuals which are classified with great confidence as a specified target class.

#Covid-19: An exploratory investigation of hashtag usage on Twitter.

Background: The literature highlights Twitter as a vital instrument tool for health policy-makers for health communication and promotion. Furthermore, Twitter is a tool allowing us to understand the focus of people regarding a topic of interest.

Objective: To provide health policy-makers with insights concerning key topics of interest in the Twitter community regarding Covid-19, and to support information search and health communication.

Interprofessional Emergency Training Leads to Changes in the Workplace.

Introduction: Preventable mistakes occur frequently and can lead to patient harm and death. The emergency department (ED) is notoriously prone to such errors, and evidence suggests that improving teamwork is a key aspect to reduce the rate of error in acute care settings. Only a few strategies are in place to train team skills and communication in interprofessional situations.

The chronically inflamed central nervous system provides niches for long-lived plasma cells.

Although oligoclonal bands in the cerebrospinal fluid have been a hallmark of multiple sclerosis diagnosis for over three decades, the role of antibody-secreting cells in multiple sclerosis remains unclear. T and B cells are critical for multiple sclerosis pathogenesis, but increasing evidence suggests that plasma cells also contribute, through secretion of autoantibodies. Long-lived plasma cells are known to drive various chronic inflammatory conditions as e.

SILVA tree viewer: interactive web browsing of the SILVA phylogenetic guide trees.

Background: Phylogenetic trees are an important tool to study the evolutionary relationships among organisms. The huge amount of available taxa poses difficulties in their interactive visualization. This hampers the interaction with the users to provide feedback for the further improvement of the taxonomic framework.

25 years of serving the community with ribosomal RNA gene reference databases and tools.

SILVA (lat. forest) is a comprehensive web resource, providing services around up to date, high-quality datasets of aligned ribosomal RNA gene (rDNA) sequences from the Bacteria, Archaea, and Eukaryota domains. SILVA dates back to the year 1991 when Dr.

FastaValidator: an open-source Java library to parse and validate FASTA formatted sequences.

Background: Advances in sequencing technologies challenge the efficient importing and validation of FASTA formatted sequence data which is still a prerequisite for most bioinformatic tools and pipelines. Comparative analysis of commonly used Bio*-frameworks (BioPerl, BioJava and Biopython) shows that their scalability and accuracy is hampered.

Findings: FastaValidator represents a platform-independent, standardized, light-weight software library written in the Java programming language.

The SILVA and "All-species Living Tree Project (LTP)" taxonomic frameworks.

SILVA (from Latin silva, forest, http://www.arb-silva.de) is a comprehensive resource for up-to-date quality-controlled databases of aligned ribosomal RNA (rRNA) gene sequences from the Bacteria, Archaea and Eukaryota domains and supplementary online services.

The SILVA ribosomal RNA gene database project: improved data processing and web-based tools.

SILVA (from Latin silva, forest, http://www.arb-silva.de) is a comprehensive web resource for up to date, quality-controlled databases of aligned ribosomal RNA (rRNA) gene sequences from the Bacteria, Archaea and Eukaryota domains and supplementary online services.

CDinFusion--submission-ready, on-line integration of sequence and contextual data.

State of the art (DNA) sequencing methods applied in "Omics" studies grant insight into the 'blueprints' of organisms from all domains of life. Sequencing is carried out around the globe and the data is submitted to the public repositories of the International Nucleotide Sequence Database Collaboration. However, the context in which these studies are conducted often gets lost, because experimental data, as well as information about the environment are rarely submitted along with the sequence data.