Publications by authors named "James Flanagan"

To identify credible causal risk variants (CCVs) associated with different histotypes of epithelial ovarian cancer (EOC), we performed genome-wide association analysis for 470,825 genotyped and 10,163,797 imputed SNPs in 25,981 EOC cases and 105,724 controls of European origin. We identified five histotype-specific EOC risk regions (p value <5 × 10) and confirmed previously reported associations for 27 risk regions. Conditional analyses identified an additional 11 signals independent of the primary signal at six risk regions (p value <10).

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Article Synopsis
  • Significant research is focused on identifying genomic variations that relate to cancer susceptibility, particularly in noncoding DNA and epigenetic changes.
  • Noncoding regions play a crucial role in regulating genes, which can affect how cancer develops, but require advanced methods for thorough investigation.
  • Future studies will explore specific areas within noncoding DNA, like pseudoexons and promoter variants, harnessing new technologies and bioinformatics to better understand their impact on cancer.
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Background: Social media is rapidly becoming the primary source to disseminate invitations to the public to consider taking part in research studies. There is, however, little information on how the contents of the advertisement can be communicated to facilitate engagement and subsequently promote intentions to participate in research.

Objective: This paper describes an experimental study that tested different behavioral messages for recruiting study participants for a real-life observational case-control study.

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Genetic testing is becoming rapidly more accessible to the general populous either through or outside healthcare systems. Few large-scale studies have been carried out to gauge public opinion in this growing area. Here, we undertook the largest cross-sectional study on genetic testing in the UK.

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Background: Ovarian cancer is the second most common gynecological cancer type after uterine cancers. In 2020, according to worldwide statistics, there were more than 313,000 new cases of ovarian cancer. Most concerning with ovarian cancer is the poor overall survival, with only 30% of patients surviving for longer than 5 years after diagnosis.

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Background: Persistent infection by oncogenic human papillomavirus (HPV) is necessary although not sufficient for development of cervical cancer. Behavioural, environmental, or comorbid exposures may promote or protect against malignant transformation. Randomised evidence is limited and the validity of observational studies describing these associations remains unclear.

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Objectives: Ovarian cancer symptoms are often non-specific and can be normalised before patients seek medical help. The Cancer Loyalty Card Study investigated self-management behaviours of patients with ovarian cancer prior to their diagnosis using loyalty card data collected by two UK-based high street retailers. Here, we discuss the feasibility outcomes for this novel research.

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Introduction: Human papillomavirus (HPV) is necessary but not sufficient for cervical cancer development. During cervical carcinogenesis, methylation levels increase across host and HPV DNA. DNA methylation has been proposed as a test to diagnose cervical intraepithelial neoplasia (CIN); we present a protocol to evaluate the accuracy of methylation markers to detect high-grade CIN and cervical cancer.

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Background: Health research using commercial data is increasing. The evidence on public acceptability and sociodemographic characteristics of individuals willing to share commercial data for health research is scarce.

Objective: This survey study investigates the willingness to share commercial data for health research in the United Kingdom with 3 different organizations (government, private, and academic institutions), 5 different data types (internet, shopping, wearable devices, smartphones, and social media), and 10 different invitation methods to recruit participants for research studies with a focus on sociodemographic characteristics and psychological predictors.

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Background: Uterine leiomyomas (UL) are the most common benign tumor in women of reproductive age. Their pathology remains unclear, which hampers the development of safe and effective treatments. Raising evidence suggests epigenetics as a main mechanism involved in tumor development.

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Background: Over-the-counter (OTC) medications are frequently used to self-care for nonspecific ovarian cancer symptoms prior to diagnosis. Monitoring such purchases may provide an opportunity for earlier diagnosis.

Objective: The aim of the Cancer Loyalty Card Study (CLOCS) was to investigate purchases of OTC pain and indigestion medications prior to ovarian cancer diagnosis in women with and without ovarian cancer in the United Kingdom using loyalty card data.

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Article Synopsis
  • - The study aimed to assess how anti-factor Xa (anti-Xa) and activated partial thromboplastin time (aPTT) correlate with heparin dosing in adult patients receiving ECMO treatment for at least 24 hours.
  • - Researchers found a weak correlation between anti-Xa and aPTT measures based on data from 27 patients, with some hemorrhagic events linked to high aPTT levels but not to anti-Xa levels.
  • - The conclusion highlighted that while hemorrhagic events were more frequent than thrombotic ones, no clear relationship was established between these events and the coagulation measures in patients, including those with COVID-19. Further research is needed for ECMO patients without COVID-19.*
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Background: DNA methylation in blood may reflect adverse exposures accumulated over the lifetime and could therefore provide potential improvements in the prediction of cancer risk. A substantial body of research has shown associations between epigenetic aging and risk of disease, including cancer. Here we aimed to study epigenetic measures of aging and lifestyle-related factors in association with risk of breast cancer.

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Background: Participation in case-control studies is crucial in epidemiological research. The self-sampling bias, low response rate, and poor recruitment of population representative controls are often reported as limitations of case-control studies with limited strategies to improve participation. With greater use of web-based methods in health research, there is a further need to understand the effectiveness of different tools to enhance informed decision-making and willingness to take part in research.

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Uterine leiomyoma (UL) is a benign tumor arising from myometrium (MM) with a high prevalence and unclear pathology. Histone modifications are altered in tumors, particularly via histone acetylation which is correlated with gene activation. To identify if the acetylation of H3K27 is involved in UL pathogenesis and if its reversion may be a therapeutic option, we performed a prospective study integrating RNA-seq (n = 48) and CHIP-seq for H3K27ac (n = 19) in UL vs MM tissue, together with qRT-PCR of SAHA-treated UL cells (n = 10).

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Numerous COVID-19 vaccines are authorized globally. To date, ∼71% of doses comprise the Pfizer/BioNTech vaccine, and ∼17% the Moderna/NIH vaccine, both of which are messenger RNA (mRNA) based. The chimpanzee Ad-based Oxford/AstraZeneca (AZ) vaccine comprises ∼9%, while the Johnson & Johnson/Janssen (J&J) human adenovirus (Ad26) vaccine ranks fourth at ∼2%.

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Polygenic risk scores (PRS) for epithelial ovarian cancer (EOC) have the potential to improve risk stratification. Joint estimation of Single Nucleotide Polymorphism (SNP) effects in models could improve predictive performance over standard approaches of PRS construction. Here, we implemented computationally efficient, penalized, logistic regression models (lasso, elastic net, stepwise) to individual level genotype data and a Bayesian framework with continuous shrinkage, "select and shrink for summary statistics" (S4), to summary level data for epithelial non-mucinous ovarian cancer risk prediction.

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Article Synopsis
  • * A new Lab-on-Chip compatible isothermal amplification technique (LAMP) was developed to accurately detect and quantify the methylated regions of MGMT, showing high specificity and sensitivity when compared to traditional gold-standard methods.
  • * This research successfully demonstrated the detection of DNA methylation on bisulfite converted DNA using the Lab-on-Chip system, paving the way for future point-of-care applications targeting other epigenetic biomarkers.
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Background: Resistance to DNA damaging chemotherapies leads to cancer treatment failure and poor patient prognosis. We investigated how genomic distribution of accessible chromatin sites is altered during acquisition of cisplatin resistance using matched ovarian cell lines from high grade serous ovarian cancer (HGSOC) patients before and after becoming clinically resistant to platinum-based chemotherapy.

Results: Resistant lines show altered chromatin accessibility at intergenic regions, but less so at gene promoters.

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  • A study was conducted to investigate the genetic factors associated with cervical cancer and cervical intraepithelial neoplasia (CIN) by comparing women with these conditions to healthy controls using data from the UK Biobank and FinnGen datasets.
  • The researchers performed a genome-wide association study (GWAS) analyzing nearly 9.6 million genetic variants and identified six significant single-nucleotide polymorphisms (SNPs) linked to the diseases, including novel and previously reported genetic loci.
  • The findings highlight the potential hereditary risk factors for cervical cancer, which can help in understanding the disease's etiology and developing prevention strategies.
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  • Sparse data on maternal milk composition typically only covers the early postnatal period, but this study expands that to participants aged 3-48 months and finds minimal changes beyond 24 months of lactation.
  • Researchers used advanced techniques like REIMS and 16S rRNA gene metataxonomics to analyze the milk, revealing that while the volume of expressed milk decreased after 24 months, its bacterial and metabolite composition remained largely stable.
  • Individual metabolites showed some changes in abundance in older nurslings, but overall, lifestyle factors and nursling sex had little effect, indicating that human milk composition is remarkably consistent throughout prolonged lactation.
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Background: Accumulating evidence suggests a relationship between endometrial cancer and ovarian cancer. Independent genome-wide association studies (GWAS) for endometrial cancer and ovarian cancer have identified 16 and 27 risk regions, respectively, four of which overlap between the two cancers. We aimed to identify joint endometrial and ovarian cancer risk loci by performing a meta-analysis of GWAS summary statistics from these two cancers.

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  • - Ovarian cancer affects 1 in 5 women who may not receive treatment on time due to vague symptoms, leading to a study investigating early signs through changes in medication purchases!
  • The case-control study aims to analyze purchasing data from 1,000 women (500 with ovarian cancer and 500 without) using loyalty card information to identify patterns linked to the disease!
  • Findings will be published ethically, ensuring dissemination through academic channels, social media, and updates to participating sites once results are available!
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Background: Methylation of viral DNA has been proposed as a novel biomarker for triage of human papillomavirus (HPV) positive women at screening. This systematic review and meta-analysis aims to assess how methylation levels change with disease severity and to determine diagnostic test accuracy (DTA) in detecting high-grade cervical intra-epithelial neoplasia (CIN).

Methods: We performed searches in MEDLINE, EMBASE and CENTRAL from inception to October 2019.

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