Semi-automated Clinical Content Curation of COVID-19 Chatbot Remote Patient Monitoring Solution.

Remote patient monitoring (RPM) programs are being increasingly utilized in the care of patients to manage acute and chronic disease including with acute COVID-19. The goal of this study is to explore the topics and patterns of patients' messages to the care team in an RPM program in patients with presumed COVID-19. We conducted a topic analysis to 6,262 comments from 3,248 patients enrolled in the COVID-19 RMP at M Health Fairview.

Contextualized medication event extraction with levitated markers.

Automatic extraction of patient medication histories from free-text clinical notes can increase the amount of relevant information to clinicians for developing treatment plans. In addition to detecting medication events, clinical text mining systems must also be able to predict event context, such as negation, uncertainty, and time of occurrence, in order to construct accurate patient timelines. Towards this goal, we introduce Levitated Context Markers (LCMs), a novel transformer-based model for contextualized event extraction.

Discovering novel drug-supplement interactions using SuppKG generated from the biomedical literature.

Objective: Develop a novel methodology to create a comprehensive knowledge graph (SuppKG) to represent a domain with limited coverage in the Unified Medical Language System (UMLS), specifically dietary supplement (DS) information for discovering drug-supplement interactions (DSI), by leveraging biomedical natural language processing (NLP) technologies and a DS domain terminology.

Materials And Methods: We created SemRepDS (an extension of an NLP tool, SemRep), capable of extracting semantic relations from abstracts by leveraging a DS-specific terminology (iDISK) containing 28,884 DS terms not found in the UMLS. PubMed abstracts were processed using SemRepDS to generate semantic relations, which were then filtered using a PubMedBERT model to remove incorrect relations before generating SuppKG.

Assessing the enrichment of dietary supplement coverage in the Unified Medical Language System.

Objective: We sought to assess the need for additional coverage of dietary supplements (DS) in the Unified Medical Language System (UMLS) by investigating (1) the overlap between the integrated DIetary Supplements Knowledge base (iDISK) DS ingredient terminology and the UMLS and (2) the coverage of iDISK and the UMLS over DS mentions in the biomedical literature.

Materials And Methods: We estimated the overlap between iDISK and the UMLS by mapping iDISK to the UMLS using exact and normalized strings. The coverage of iDISK and the UMLS over DS mentions in the biomedical literature was evaluated via a DS named-entity recognition (NER) task within PubMed abstracts.

iDISK: the integrated DIetary Supplements Knowledge base.

Objective: To build a knowledge base of dietary supplement (DS) information, called the integrated DIetary Supplement Knowledge base (iDISK), which integrates and standardizes DS-related information from 4 existing resources.

Materials And Methods: iDISK was built through an iterative process comprising 3 phases: 1) establishment of the content scope, 2) development of the data model, and 3) integration of existing resources. Four well-regarded DS resources were integrated into iDISK: The Natural Medicines Comprehensive Database, the "About Herbs" page on the Memorial Sloan Kettering Cancer Center website, the Dietary Supplement Label Database, and the Natural Health Products Database.

Prototyping an Interactive Visualization of Dietary Supplement Knowledge Graph.

Dietary supplements (DS) are widely consumed. However, most people have limited knowledge about the safety and efficacy of DS. Even though there exists the well-curated integrated DIetary Supplement Knowledge base (iDISK) with a formal knowledge representation, it lacks a user-friendly interface for general consumers to query and retrieve DS information relevant to their needs.

Normalizing Dietary Supplement Product Names Using the RxNorm Model.

The use of dietary supplements (DSs) is increasing in the U.S. As such, it is crucial for consumers, clinicians, and researchers to be able to find information about DS products.

Analyzing Social Media Data to Understand Consumer Information Needs on Dietary Supplements.

Despite the high consumption of dietary supplements (DS), few reliable, relevant, and comprehensive online resources could satisfy information seekers. This research study aims to understand consumer information needs on DS using topic modeling, and to evaluate accuracy in correctly identifying topics from social media. We retrieved 16,095 unique questions posted on Yahoo! Answers relating to 438 unique DS ingredients mentioned in sub-section, "Alternative medicine" under the section, "Health" .

ALOHA: developing an interactive graph-based visualization for dietary supplement knowledge graph through user-centered design.

Background: Dietary supplements (DSs) are widely used. However, consumers know little about the safety and efficacy of DSs. There is a growing interest in accessing health information online; however, health information, especially online information on DSs, is scattered with varying levels of quality.

Detecting Signals of Dietary Supplement Adverse Events from the CFSAN Adverse Event Reporting System (CAERS).

Dietary supplement adverse events are potentially severe, yet knowledge regarding the safety of dietary supplements is limited. The CFSAN Adverse Event Reporting System (CAERS) contains records of adverse events attributed to supplements and is potentially useful for dietary supplement pharmacovigilance. This study investigates the feasibility of mining CAERS for dietary supplement adverse events as well as for monitoring the safety of dietary supplement products.

Evaluating active learning methods for annotating semantic predications.

Objectives: This study evaluated and compared a variety of active learning strategies, including a novel strategy we proposed, as applied to the task of filtering incorrect semantic predications in SemMedDB.

Materials And Methods: We evaluated 8 active learning strategies covering 3 types-uncertainty, representative, and combined-on 2 datasets of 6,000 total semantic predications from SemMedDB covering the domains of substance interactions and clinical medicine, respectively. We also designed a novel combined strategy called dynamic that does not use hand-tuned hyperparameters.

Comparing Existing Resources to Represent Dietary Supplements.

Dietary supplements, often considered as food, are widely consumed despite of limited knowledge around their safety/efficacy and any well-established regulatory policies, unlike their drug counterparts. Informatics methods may be useful in filling this knowledge gap, however, the lack of standardized representation of DS hinders this progress. In this pilot study, five electronic DS resources, i.