Publications by authors named "Jake Parker"

Barley (1,3;1,4)-β-d-glucanase is believed to have evolved from an ancestral monocotyledon (1,3)-β-d-glucanase, enabling the hydrolysis of (1,3;1,4)-β-d-glucans in the cell walls of leaves and germinating grains. In the present study, we investigated the substrate specificities of variants of the barley enzymes (1,3;1,4)-β-d-glucan endohydrolase [(1,3;1,4)-β-d-glucanase] isoenzyme EII (EII) and (1,3)-β-d-glucan endohydrolase [(1,3)-β-d-glucanase] isoenzyme GII (GII) obtained by protein segment hybridization and site-directed mutagenesis. Using protein segment hybridization, we obtained three variants of EII in which the substrate specificity was that of a (1,3)-β-d-glucanase and one variant that hydrolyzed both (1,3)-β-d-glucans and (1,3;1,4)-β-d-glucans; the wild-type enzyme hydrolyzed only (1,3;1,4)-β-d-glucans.

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Article Synopsis
  • The goal of synthetic biology and bionanotechnology is to create artificial allosteric protein switches to integrate with both biological and non-biological systems for processing information and energy.
  • Designing effective protein switches with specific performance metrics is challenging, but researchers have developed chimeric proteins that act as YES gate switches, achieving large dynamic ranges and quick response times.
  • The study also showcases the ability to reconfigure these YES gate switches into AND gate switches and assemble them into complex signaling networks, supporting advanced applications like drug biosensors and protein biomarkers.
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Natural evolution produced polypeptides that selectively recognize chemical entities and their polymers, ranging from ions to proteins and nucleic acids. Such selective interactions serve as entry points to biological signaling and metabolic pathways. The ability to engineer artificial versions of such entry points is a key goal of synthetic biology, bioengineering and bioelectronics.

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Rapid techniques for producing high-quality recombinant proteins are essential for fast protein functional analysis, as well as various screening applications. Cell-free protein expression is an enabling tool in protein research capable of producing high-quality proteins within a few hours. In this chapter, we describe the use of a Leishmania tarentolae-based cell-free expression system to produce antibody fragments coupled to the analysis of their interaction with their ligands.

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Summary: Methods for antibody structure prediction rely on sequence homology to experimentally determined structures. Resulting models may be accurate but are often stereochemically strained, limiting their usefulness in modeling and design workflows. We present the AbPredict 2 web-server, which instead of using sequence homology, conducts a Monte Carlo-based search for low-energy combinations of backbone conformations to yield accurate and unstrained antibody structures.

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Objective: To evaluate the Kimberley Population Health Unit (KPHU) prevocational public health placement in terms of its contribution to resident medical officers' (RMOs') knowledge, skills, career path and aspirations.

Design: All RMOs who had completed a public health placement at the KPHU (n=27) during 2001-2012 were invited to complete an online survey in September 2012.

Setting: The KPHU, based in Broome, provides population health services to the Kimberley region, far north Western Australia.

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Article Synopsis
  • Global health training is well-established in places like North America, emphasizing social accountability in medical education, but is not well-integrated into Australia's specialty training programs.
  • International rotations in low-resource settings offer many advantages, yet they also pose risks to the trainees, the host communities, and the organizations involved.
  • Developing formal systems for global health training in Australia could better equip medical professionals to address regional and global health challenges.
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