Publications by authors named "Jacob F Wynne"

Purpose: This study aims to develop a robust, large-scale deep learning model for medical image segmentation, leveraging self-supervised learning to overcome the limitations of supervised learning and data variability in clinical settings.

Methods And Materials: We curated a substantial multi-center CT dataset for self-supervised pre-training using masked image modeling with sparse submanifold convolution. We designed a series of Sparse Submanifold U-Nets (SS-UNets) of varying sizes and performed self-supervised pre-training.

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  • * This study explores the use of radiomics, a novel field focused on extracting information from medical images, to create a predictive model for assessing radiotherapy response within the first three months post-treatment.
  • * Using data from 95 patients and advanced classifiers like random forests and support vector machines, the research identified top radiomic features, achieving an area under the curve (AUC) of 0.829, indicating strong predictive ability for treatment outcomes.
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Radiotherapy aims to deliver a prescribed dose to the tumor while sparing neighboring organs at risk (OARs). Increasingly complex treatment techniques such as volumetric modulated arc therapy (VMAT), stereotactic radiosurgery (SRS), stereotactic body radiotherapy (SBRT), and proton therapy have been developed to deliver doses more precisely to the target. While such technologies have improved dose delivery, the implementation of intra-fraction motion management to verify tumor position at the time of treatment has become increasingly relevant.

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  • Positron Emission Tomography (PET) is widely used for medical imaging, but there's a tradeoff between achieving high image quality and minimizing radiation exposure to patients.
  • The PET Consistency Model (PET-CM) is introduced as an innovative technique that generates high-quality full-dose images from low-dose inputs using a two-step diffusion process, which includes adding noise and then denoising with a specialized network.
  • Experimental results show that PET-CM outperforms existing methods, providing superior image quality within significantly less computation time, achieving impressive evaluation metrics related to image fidelity and requiring only about 62 seconds for processing per patient.
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  • - The study addresses the limitations of cone-beam computed tomography (CBCT) scans in adaptive radiotherapy by developing a conditional diffusion model to enhance the quality of CBCT to match that of standard CT scans for better image-guided treatment.
  • - A conditional denoising diffusion probabilistic model (DDPM) using a U-net architecture was trained on images from deformed planning CT and CBCT pairs, demonstrating its effectiveness in two patient studies — one for brain and another for head-and-neck cases.
  • - The results indicated substantial improvements in the generated synthetic CT (sCT) quality over the original CBCT, as measured by metrics like mean absolute error (MAE) and peak signal-to-noise ratio (PSNR
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  • This work presents a new method for quickly creating high-quality CT images from low-quality CBCT images, aiding in adaptive radiotherapy.
  • The authors modify a technique called contrastive unpaired translation (CUT) for medical imaging and test it on a pelvic CT dataset.
  • The results show that CUT performs better than an existing method called cycleGAN, using fewer resources and time, thereby enhancing the effectiveness of online adaptive radiotherapy.
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Objectives: International trials have reported conflicting findings on whether the association between age and worse overall survival (OS) among children with Wilms tumor (WT) is due to age as an independent prognostic factor or the observation of more advanced disease at older ages. We sought to further elucidate this relationship using a population-based registry analysis.

Methods: The Surveillance, Epidemiology, and End Results database was queried for all patients diagnosed with WT under the age of 20.

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Accurate tracking of anatomic landmarks is critical for motion management in liver radiation therapy. Ultrasound (US) is a safe, low-cost technology that is broadly available and offer real-time imaging capability. This study proposed a deep learning-based tracking method for the US image-guided radiation therapy.

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Medical imaging is widely used in the diagnosis and treatment of cancer, and artificial intelligence (AI) has achieved tremendous success in medical image analysis. This paper reviews AI-based tumor subregion analysis in medical imaging. We summarize the latest AI-based methods for tumor subregion analysis and their applications.

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This paper reviewed the deep learning-based studies for medical imaging synthesis and its clinical application. Specifically, we summarized the recent developments of deep learning-based methods in inter- and intra-modality image synthesis by listing and highlighting the proposed methods, study designs, and reported performances with related clinical applications on representative studies. The challenges among the reviewed studies were then summarized with discussion.

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Objectives: Treatment of central and ultra-central lung tumors with stereotactic ablative radiotherapy (SABR) remains controversial due to risks of treatment-related toxicities compared with peripheral tumors. Here we report our institution's experience in treating central and ultra-central lung tumor patients with SABR.

Materials And Methods: We retrospectively reviewed outcomes in 68 patients with single lung tumors, 34 central and 34 peripheral, all treated with SABR consisting of 50 Gy in 4-5 fractions.

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Introduction: In this prospective pilot study, we evaluated the feasibility and potential utility of measuring multiple exhaled gases as biomarkers of radiation pneumonitis (RP) in patients receiving stereotactic ablative radiotherapy (SABR) for lung tumors.

Methods: Breath analysis was performed for 26 patients receiving SABR for lung tumors. Concentrations of exhaled nitric oxide (eNO), carbon monoxide (eCO), nitrous oxide (eN2O), and carbon dioxide (eCO2) were measured before and immediately after each fraction using real-time, infrared laser spectroscopy.

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Circulating tumor DNA (ctDNA) is a promising biomarker for noninvasive assessment of cancer burden, but existing ctDNA detection methods have insufficient sensitivity or patient coverage for broad clinical applicability. Here we introduce cancer personalized profiling by deep sequencing (CAPP-Seq), an economical and ultrasensitive method for quantifying ctDNA. We implemented CAPP-Seq for non-small-cell lung cancer (NSCLC) with a design covering multiple classes of somatic alterations that identified mutations in >95% of tumors.

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