Strategies and tactics for optimizing the Hit-to-Lead process and beyond--a computational chemistry perspective.

The Hit-to-Lead-to-Candidate process continues to evolve rapidly, and while technological advances offer much potential, the reality often pales to the promise. Conversely, strategies and tactics implementing existing technologies may result in more benefit in the end. This article focuses on some of the thinking and approaches that may improve the efficiency and effectiveness of the beginnings of the drug discovery path.

NMR chemical shifts. Substituted acetylenes.

The MPW1PW91/6-311+G(2d,p) and MP2/6-311+G(2d,p) GIAO nuclear shieldings for a series of monosubstituted acetylenes have been calculated using the MP2/6-311G(2d,p) geometries. Axially symmetric substituents such as fluorine may lead to large changes in the isotropic shielding but have little effect on the tensor component (zz) about the C[triple bond]C bond axis. On the other hand, substituents such as vinyl and aldehyde groups lead to essentially no difference in the isotropic shielding but are calculated to give a large zz paramagnetic shift to the terminal carbon of the acetylene group, without having much effect on the inner carbon.

The impact of informatics and computational chemistry on synthesis and screening.

High-throughput synthesis and screening technologies have enhanced the impact of computational chemistry on the drug discovery process. From the design of targeted, drug-like libraries to 'virtual' optimization of potency, selectivity and ADME/Tox properties, computational chemists are able to efficiently manage costly resources and dramatically shorten drug discovery cycle times. This review will describe some of the successful strategies and applications of state-of-the-art algorithms to enhance drug discovery, as well as key points in the drug discovery process where computational methods can have, and have had, greatest impact.

Conformational Studies in the Cyclohexane Series. 1. Experimental and Computational Investigation of Methyl, Ethyl, Isopropyl, and tert-Butylcyclohexanes.

The conformational enthalpy (DeltaH degrees ), entropy (DeltaS degrees ), and free energy (-DeltaG degrees ) of methyl- (1), ethyl- (2), and isopropylcyclohexane (3) have been reinvestigated both experimentally and computationally. A novel experimental approach to evaluation of highly biased conformational equilibria is described that obviates the need to measure large axial/equatorial isomer ratios directly in order to determine the equilibrium constant: the natural abundance (13)C signal for the C(2,6) resonance in the equatorial isomer of an alkylcyclohexane may be used as an internal reference, and the ratio of this band area to that of an enriched (13)C nucleus in the axial isomer gives K following correction for statistical differences and the differing (13)C-content of the signals being monitored. The experimental conformational enthalpies (DeltaH degrees ), determined at 157 K in independent studies at two laboratories, were found to be (kcal/mol) 1.