Publications by authors named "J Y Coppee"

Microbial pathogenesis is mediated by the expression of virulence genes. However, as microbes with identical virulence gene content can differ in their pathogenic potential, other virulence determinants must be involved. Here, by combining comparative genomics and transcriptomics of a large collection of isolates of the model pathogen Listeria monocytogenes, time-lapse microscopy, in vitro evolution and in vivo experiments, we show that the individual stress responsiveness of L.

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Alternative transcription start site (TSS) usage regulation has been identified as a major means of gene expression regulation in metazoans. However, in fungi, its impact remains elusive as its study has thus far been restricted to model yeasts. Here, we first re-analyzed TSS-seq data to define genuine TSS clusters in 2 species of pathogenic Cryptococcus.

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Resistance to fluconazole (FLC), the most widely used antifungal drug, is typically achieved by altering the azole drug target and/or drug efflux pumps. Recent reports have suggested a link between vesicular trafficking and antifungal resistance. Here, we identified novel regulators of extracellular vesicle (EV) biogenesis that impact FLC resistance.

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Article Synopsis
  • The study investigates additional Toxin/Antitoxin (TA) systems in the Vibrio cholerae N16961 genome, which already contains 18 known type II TA systems within its chromosomal superintegron.
  • Researchers identified a new functional type II TA system (VCA0497-0498) and found that its antitoxin represses its own gene expression, while also linking it to a newly discovered superfamily of TA systems.
  • Additionally, they uncovered a novel type I TA system (VCA0495) that includes antisense non-coding RNAs; silencing these RNAs caused cell death, indicating the functional role of this TA system, thereby increasing the total number to 19 within the
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Article Synopsis
  • The study investigates the relationship between bacteria, their viruses (bacteriophages), and human health, particularly how these populations coexist in the digestive tract.
  • Researchers used RNA sequencing to identify genes in E. coli that changed expression in different environments, finding specific genes that affected how E. coli interacted with virulent phages.
  • This research highlights the complex dynamics among bacteria, phages, and host organisms, showing that gene regulation impacts their interactions and overall balance in the intestines.
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