Publications by authors named "J Vermeesch"

Background: A subset of developmental disorders (DD) is characterized by disease-specific genome-wide methylation changes. These episignatures inform on the underlying pathogenic mechanisms and can be used to assess the pathogenicity of genomic variants as well as confirm clinical diagnoses. Currently, the detection of these episignature requires the use of indirect methylation profiling methodologies.

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Genome-wide non-invasive prenatal cell-free DNA screening (NIPT) can lead to the early detection of important health-related information for the fetus and pregnant woman. However, the expanding scope of screening heightens information complexity and creates challenges for clinical interactions. This study explored Belgian healthcare professionals' experiences to identify challenges and solutions to expanded NIPT in practice.

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Structural variants (SVs) are important contributors to human disease. Their characterization remains however difficult due to their size and association with repetitive regions. Long-read sequencing (LRS) and optical genome mapping (OGM) can aid as their molecules span multiple kilobases and capture SVs in full.

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Article Synopsis
  • Circulating cell-free DNA (cfDNA) is being studied as a noninvasive marker for cancer detection, and understanding its origins could enhance cancer diagnosis and treatment management.* -
  • The researchers created MetDecode, a deconvolution algorithm that identifies cancer tissue origins using DNA methylation patterns, and built a reference atlas from existing data for various cancers.* -
  • MetDecode showed high accuracy, correctly identifying tissue origins in 84.2% of plasma cfDNA samples from cancer patients, and can be accessed online for further use.*
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