Publications by authors named "J Vandenameele"

Article Synopsis
  • Transcriptomes are made up of various RNA classes that have important but often unclear functions, and their deregulation is linked to many diseases.
  • The study focused on the RanBP2-type Zinc Finger (ZF) domain to understand single-stranded RNA-binding proteins (RBPs), revealing that different ZFs have similar sequence specificity despite variations in RNA-binding residues.
  • A new 6-ZF chimeric protein was created to improve targeting of longer RNA sequences, successfully recognizing a specific 20-nucleotide target both in tests and living cells, highlighting the potential of ZFs in RBP design despite challenges in engineering specificity.
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Six 1',5'-anhydrohexitol uridine triphosphates were synthesized with aromatic substitutions appended via a carboxamide linker to the 5-position of their bases. An improved method for obtaining such 5-substituted hexitol nucleosides and nucleotides is described. The incorporation profile of the nucleotide analogues into a DNA duplex overhang using recently evolved XNA polymerases is compared.

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A mannose binding jacalin-related lectin from Ananas comosus stem (AcmJRL) was purified and biochemically characterized. This lectin is homogeneous according to native, SDS-PAGE and N-terminal sequencing and the theoretical molecular mass was confirmed by ESI-Q-TOF-MS. AcmJRL was found homodimeric in solution by size-exclusion chromatography.

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Recent advances in transcriptome sequencing and analysis have revealed the complexity of the human genome. The majority (≈ 98%) of cellular transcripts is not translated into proteins and represents a vast, unchartered world of functional non-coding RNAs. Most of them adopt a well-defined three-dimensional structure to achieve their biological functions.

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