Publications by authors named "J S Calarco"

Article Synopsis
  • Reliable methods for detecting gene expression are crucial for studying development and responses to genetic/environmental changes.
  • Caenorhabditis elegans is a valuable model organism due to its sequenced genome, transparent body, and available genetic tools, making it easier to connect gene expression to cellular characteristics.
  • The text reviews various techniques for analyzing gene expression in C. elegans, including bulk RNA sequencing, single-cell RNA sequencing, and proteomics, as well as resources for accessing gene expression data.
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Article Synopsis
  • A new robotic system has been developed to enable accurate 3D imaging and morphological profiling of small model organisms like nematodes, overcoming challenges in resolution and complex shapes.
  • The system allows for contactless rotation and high-resolution imaging, which provides detailed 3D reconstructions at various developmental stages and mutant strains.
  • This technological advancement has led to the discovery of genetic interactions relevant to neurological and muscular disorders, showcasing its potential for broader applications in studying various biological samples.
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The nematode Caenorhabditis elegans is widely employed as a model organism to study basic biological mechanisms. However, transgenic C. elegans are generated by manual injection, which remains low-throughput and labor-intensive, limiting the scope of approaches benefitting from large-scale transgenesis.

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is a promising subject for globally coordinated surveillance of antimicrobial resistance (AMR) in water environments due to its clinical relevance and widespread use as an indicator of fecal contamination. Cefotaxime-resistant was recently evaluated favorably for this purpose by the World Health Organization TriCycle Protocol, which specifies tryptone bile x-glucuronide (TBX) medium and incubation at 35°C. We assessed comparability with the U.

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Water reuse is an essential strategy for reducing water demand from conventional sources, alleviating water stress, and promoting sustainability, but understanding the effectiveness of associated treatment processes as barriers to the spread of antibiotic resistance is an important consideration to protecting human health. We comprehensively evaluated the reduction of antibiotic resistance genes (ARGs) and antibiotic-resistant bacteria (ARB) in two field-operational water reuse systems with distinct treatment trains, one producing water for indirect potable reuse (ozone/biologically-active carbon/granular activated carbon) and the other for non-potable reuse (denitrification-filtration/chlorination) using metagenomic sequencing and culture. Relative abundances of total ARGs/clinically-relevant ARGs and cultured ARB were reduced by several logs during primary and secondary stages of wastewater treatment, but to a lesser extent during the tertiary water reuse treatments.

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