Publications by authors named "J P Strachan"

The SUMO-targeted ubiquitin ligase (STUbL) family is involved in multiple cellular processes via a wide range of mechanisms to maintain genome stability. One of the evolutionarily conserved functions of STUbL is to promote changes in the nuclear positioning of DNA lesions, targeting them to the nuclear periphery. In Schizossacharomyces pombe, the STUbL Slx8 is a regulator of SUMOylated proteins and promotes replication stress tolerance by counteracting the toxicity of SUMO conjugates.

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Physics-based Ising machines (IM) have been developed as dedicated processors for solving hard combinatorial optimization problems with higher speed and better energy efficiency. Generally, such systems employ local search heuristics to traverse energy landscapes in searching for optimal solutions. Here, we quantify and address some of the major challenges met by IMs by extending energy-landscape geometry visualization tools known as disconnectivity graphs.

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Article Synopsis
  • Lynch syndrome (LS) patients have a high risk of colorectal cancer, currently monitored through biennial colonoscopy, which can be burdensome and invasive.
  • This study assessed whether faecal immunochemical testing (FIT) for faecal haemoglobin could effectively replace the need for routine colonoscopy in LS surveillance.
  • Results showed FIT has low sensitivity for detecting adenomas, with no improvement when a second test was added, suggesting it may not be a viable alternative to colonoscopy.
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Seasonal influenza epidemics result in high levels of healthcare utilization. Vaccination is an effective strategy to reduce the influenza-related burden of disease. However, reporting vaccine effectiveness does not convey the population impacts of influenza vaccination.

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Specialized function gradient computing hardware could greatly improve the performance of state-of-the-art optimization algorithms. Prior work on such hardware, performed in the context of Ising Machines and related concepts, is limited to quadratic polynomials and not scalable to commonly used higher-order functions. Here, we propose an approach for massively parallel gradient calculations of high-degree polynomials, which is conducive to efficient mixed-signal in-memory computing circuit implementations and whose area scales proportionally with the product of the number of variables and terms in the function and, most importantly, independent of its degree.

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