Publications by authors named "J Josephine Botsch"

RNA base editing relies on the introduction of adenosine-to-inosine changes into target RNAs in a highly programmable manner in order to repair disease-causing mutations. Here, we propose that RNA base editing could be broadly applied to perturb protein function by removal of regulatory phosphorylation and acetylation sites. We demonstrate the feasibility on more than 70 sites in various signaling proteins and identify key determinants for high editing efficiency and potent down-stream effects.

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Article Synopsis
  • Competing midge species in Lake Mývatn show synchronized population changes, suggesting they rely on a shared resource, leading to questions about their coexistence despite high larval numbers.!* -
  • The study investigated whether these species (Tanytarsus gracilentus and Chironomus islandicus) partition resources spatially and found that both species' populations were positively correlated in location, indicating limited spatial partitioning.!* -
  • Stable carbon isotopes revealed dietary differences: T. gracilentus feeds on nutrient-rich algae while C. islandicus consumes detritus and microbes, highlighting how similar species can coexist by utilizing different resources even in overlapping areas.!*
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Ongoing climate change has increased temperatures and the frequency of droughts in many parts of the world, potentially intensifying the desiccation risk for insects. Because resisting desiccation becomes more difficult at higher temperatures and lower humidity, avoiding water loss is a key challenge facing terrestrial insects. However, few studies have examined the interactive effects of temperature and environmental humidity on desiccation resistance in insects.

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Nonbiting midges (family Chironomidae) are found throughout the world in a diverse array of aquatic and terrestrial habitats, can often tolerate harsh conditions such as hypoxia or desiccation, and have consistently compact genomes. Yet we know little about the shared molecular basis for these attributes and how they have evolved across the family. Here, we address these questions by first creating high-quality, annotated reference assemblies for Tanytarsus gracilentus (subfamily Chironominae, tribe Tanytarsini) and Parochlus steinenii (subfamily Podonominae).

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Transmembrane E3 ligases play crucial roles in homeostasis. Much protein and organelle quality control, and metabolic regulation, are determined by ER-resident MARCH6 E3 ligases, including Doa10 in yeast. Here, we present Doa10/MARCH6 structural analysis by cryo-EM and AlphaFold predictions, and a structure-based mutagenesis campaign.

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